SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20913

Length: 814 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20913

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	tRNA-dihydrouridine synthase 3-like n=2 Tax=Arabidopsis RepID=DUS3L_ARATH	-	-	83%
FL-Next	sp=tRNA-dihydrouridine synthase 3-like; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	dihydrouridine synthase family protein	-	-	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	tRNA-dihydrouridine synthase	IPR001269	-	0.0	89%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
132	85		14		0.993533
133		85		14	0.993533
134	85	14			0.993533
135	85		14		0.993533
136		88		11	0.923564
138	88			11	0.923564
139	77	11	11		0.968132
141		77	11	11	0.968132
142	88		11		0.923564
143	77	11	11		0.968132
147		11	77		0.968132
148	88			11	0.923564
149		11	88		0.923564
150			88	11	0.923564
153			11	88	0.923564
154		88		11	0.923564
157	88	11			0.923564
158			88	11	0.923564
160	11			88	0.923564
161	88			11	0.923564
382	16		83		0.999991
428		76		15	0.999983
474	28		71		1.0
624		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain