SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20906

Length: 1181 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20906

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to protein kinase, putative n=1 Tax=Vitis vinifera RepID=UPI0001984AFF	-	-	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	protein kinase	-	-	63%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	63%
Blast2go	plasma membrane	GO:0005886	Cellular Component	63%
Blast2go	nucleus	GO:0005634	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	63%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	63%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	63%
Blast2go	Protein kinase-like domain	IPR011009	-	63%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	63%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	63%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPF9

Fln msg: STOP codon was not found. Distance to subject end: 1 aas, Unexpected STOP codon in 5 prime region,

Fln protein: MNVIESAQSVNEFRPIRELGHGDMGTVYLAKHVTSGNPVAMKVMNKELMQKKRSHKRARMEKEILQKLDHPFLPKLFTKFESESHSFLLMSYCSGGDLNTLRQKQKNRRFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLIINNPRRECKTKDSYRDQNGSFKKKSKSLMAKLNPGQLGAKDCMNASAIIITKHDDSARETNFCNLDGSKDSVHEQSHSFVGTEEYVAPEILWGKGHGVAVDWWAFGILLYEMVYGKTPFKGCTRKETFYNILCQEPPQLSEPSSPLKDLLRALLVKEPTLRLGFNSGAQEIKNHKFFEGVRWDELEYVYRPPFCSSSFQFLSIRAWYWMIMYIQLKCLRNF

Protein Length: 384

Fln nts: ATTTGGTGGTTTACATGGCATGTAGTTTAGG_-_ATGAACGTCATCGAATCGGCGCAGTCTGTGAACGAGTTCAGGCCTATCAGAGAGCTGGGCCATGGCGATATGGGGACCGTGTATCTGGCAAAGCATGTGACCAGCGGGAATCCCGTGGCCATGAAGGTAATGAACAAGGAGCTTATGCAGAAGAAGAGGAGCCATAAAAGGGCGCGGATGGAGAAGGAGATTTTGCAGAAGCTGGACCATCCCTTCTTGCCCAAGCTTTTCACAAAGTTTGAGTCGGAAAGCCACTCTTTTCTGCTCATGAGCTACTGCTCCGGAGGGGACCTCAATACGCTCAGGCAAAAGCAGAAGAACAGGAGGTTTTCTGAGTCTGCTGCCAGATTCTATGCAGCAGAAGTTGTGCTTGCACTAGAGTATTTGCACCAGCATGGAATTTTGTACAGAGACCTGAAACCTGAAAACATATTGCTTCAAGCAGATGGTCATATCATGATCACTGATTTCGATCTCTCGCTTATCATCAACAATCCACGAAGAGAGTGTAAGACAAAGGATTCTTACAGGGATCAAAATGGATCATTTAAGAAGAAGAGCAAGTCACTCATGGCGAAGTTGAATCCGGGGCAGCTGGGAGCCAAAGATTGCATGAATGCGAGCGCCATAATAATAACAAAACATGATGACAGTGCCAGGGAGACCAATTTTTGCAATTTGGATGGTAGCAAGGATTCAGTTCACGAGCAGTCTCATTCGTTTGTAGGCACGGAAGAATATGTTGCCCCAGAAATCTTGTGGGGCAAGGGCCATGGCGTTGCAGTGGATTGGTGGGCTTTTGGTATATTGTTGTATGAGATGGTGTATGGGAAGACCCCTTTCAAGGGGTGCACTAGGAAAGAAACGTTTTATAACATATTGTGTCAGGAACCACCACAGCTCTCAGAGCCTTCCAGCCCCTTGAAAGATTTACTCCGGGCCTTATTGGTGAAGGAGCCCACTCTCAGATTGGGGTTCAACTCTGGTGCGCAGGAGATTAAGAATCACAAATTCTTTGAAGGTGTTAGATGGGATGAGTTAGAATATGTGTATAGACCCCCCTTTTGTTCCTCTTCCTTTCAGTTTTTGAGCATTCGTGCATGGTATTGGATGATAATGTACATACAATTGAAATGTTTGAGAAATTTTT

Fln Alignment:

sp_v1.1_unigene20906___M*FRMNVIESAQSVNEFRPIRELGHGDMGTVYLAKHVTSGNPVAMKVMNKELMQKKRSHKRARMEKEILQKLDHPFLPKLFTKFESESHSFLLMSYCSGGDLNTLRQKQKNRRFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLIINNPRRECKTKDSYRDQNGSFKKKSKSLMAKLNPGQLGAKDCMNASAIIITKHDDSARETNFCNLDGSKDSVHEQSHSFVGTEEYVAPEILWGKGHGVAVDWWAFGILLYEMVYGKTPFKGCTRKETFYNILCXXXXXXXXXXXXXKDLLRALLVKEPTLRLGFNSGAQEIKNHKFFEGVRWDELEYVYRPPFCSSSFQF
A9NPF9_______________MEFRMNVIESAQSVDEFTPIRTLGHGDMGTVYLAKHMTSGKPVAMKVMSKELMQKKRSHKRAWMEKEILQKLDHPFLPKLFTKFESKNHSFLLMSYCSGGDLNTLRQRQKDRKFSESAARFYAAEVVLALEYLHQHGILYRDLKPENILLQADGHIMITDFDLSLMINNSQ-ESRAKDSYRDQNGSCKKKTKSFLAKLNPGHVGAKDCMNASAMITTKQDDSAKETSFCHLDGRKESVYEQAHSFVGTEEYVAPEILWGKGHGIAVDWWAFGVLLYEMVYGKTPFKGCNRKETFYNILCKEPPQLSEHSSPLKDLLRRLLVKEPTLRLGFNSGAQEIKNHEFFEGVRWDELEYVSRPPFVPPPFSF

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
627			33	66	0.997452
644	66		33		0.997452
692	85		14		0.993533
814	10		90		0.90298
834		11		88	0.923564
835			88	11	0.923564
837			11	77	0.968132
918		16		83	0.999991
942	16		83		0.999991
969		75		25	1.0
998	20			80	1.0
1053	66		33		1.0
1085	10	90			0.90298
1087	90		10		0.90298
1089	12		87		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain