SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20889

Length: 558 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene20889
CGTCGTGACCTTGGCTGTCACTCATATTGGCTTAAAGAAAATCTGAATTCAAAATTAACACTCTGGCGTTTGGGCACTTTACCACCTGCATTAATTGCATTTAATGGTCACGTTCATCCCATTGATCCTTCTTGGCACATGCTGGGATTGGGCTATCAATCTAAAAGCAATCAAGACTCTCTCCAAACAGCTGCTGTAATTCACTATAATGGCCAGGCAAAACCATGGCTAGATATTGCATTTCCCAAGTTAAAACCTTTCTGGACAAAATATGTAGATTACTCTGATGAATTTATTAGAAATTGTGATATTGTGGAGTCATAGTTTGAACACTTCTGCTCGATTCGCTGTATTGATTCTTTTGAAGTGTAGGCGGGGTCTGCTGTGGGTGAAGGTGAACTATGCAGTAATTTTGCCCACCTTCCAACCACATAAAGTAGATAGATGAAGGCTCAATATTACATGAGCCTCTCTTATCATTTGTCTATACAGATATATTTTTTTGCATCAGAAAAAAGTTGAAGATGTGACAAGATAAGCTCCTATTGGAAGATTTTG

Ace file of the UniGene sp_v1.1_unigene20889

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycosyltransferase (EC:2.4.1.43); K13648 alpha-1,4-galacturonosyltransferase [EC:2.4.1.43]	-	-	3.99931e-42	76%
FL-Next	Isoform 2 of Probable galacturonosyltransferase 13 OS=Arabidopsis thaliana GN=GAUT13	-	-	0.0	73%
Blast2go	galacturonosyltransferase gaut12 13 14 15-like protein	-	-	7.20127e-42	87%

Source	ECs	Term	Type	e value	Identity
AutoFact	Polygalacturonate 4-alpha-galacturonosyltransferase.	EC:2.4.1.43	-	3.99931e-42	76%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Starch and sucrose metabolism	00500		3.99931e-42	76%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520		3.99931e-42	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	7.20127e-42	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycosyl transferase, family 8	IPR002495	-	7.20127e-42	87%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q0WV13-2

Fln msg: your sequence is shorter than subject: 108 - 532

Fln protein: RRDLGCHSYWLKENLNSKLTLWRLGTLPPALIAFNGHVHPIDPSWHMLGLGYQSKSNQDSLQTAAVIHYNGQAKPWLDIAFPKLKPFWTKYVDYSDEFIRNCDIVES*

Protein Length: 109

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTGGCTTAAAGAAAATCTGAATTCAAAATTAACACTCTGGCGTTTGGGCACTTTACCACCTGCATTAATTGCATTTAATGGTCACGTTCATCCCATTGATCCTTCTTGGCACATGCTGGGATTGGGCTATCAATCTAAAAGCAATCAAGACTCTCTCCAAACAGCTGCTGTAATTCACTATAATGGCCAGGCAAAACCATGGCTAGATATTGCATTTCCCAAGTTAAAACCTTTCTGGACAAAATATGTAGATTACTCTGATGAATTTATTAGAAATTGTGATATTGTGGAGTCATAG___TTTGAACACTTCTGCTCGATTCGCTGTATTGATTCTTTTGAAGTGTAGGCGGGGTCTGCTGTGGGTGAAGGTGAACTATGCAGTAATTTTGCCCACCTTCCAACCACATAAAGTAGATAGATGAAGGCTCAATATTACATGAGCCTCTCTTATCATTTGTCTATACAGATATATTTTTTTGCATCAGAAAAAAGTTGAAGATGTGACAAGATAAGCTCCTATTGGAAGATTTTG

Fln Alignment:

sp_v1.1_unigene20889___WLKENLNSKLTLWRLGTLPPALIAFNGHVHPIDPSWHMLGLGYQSKSNQDSLQTAAVIHYNGQAKPWLDIAFPKLKPFWTKYVDYSDEFIRNCDIVE
Q0WV13-2_____________WLKENLKSNLTMWKLGTLPPALIAFKGHVQPIDSSWHMLGLGYQSKTNLENAKKAAVIHYNGQSKPWLEIGFEHLRPFWTKYVNYSNDFIKNCHILE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain