SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20874

Length: 2435 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20874
ATGGGGAAACTGATTCGGTAAAACATTTTAACTGATAGAAGTGACTGCAACGTAAACGGATGAATCCACGCATCAATGGCTTCTGTAACGTCATAATTGCCATTACAGCGTCGAAGTAACCCCGGACCCCAACGCTCAAACCCTCGTGCATCTCTGCGGATAATGCAATCGTCTTAAAGATCTGTAATCTGTAAATAATCGACGAATTCTGTCGATCGGAGCAGCAACGTTAATATCAGTAGGGCGGCGAAATCTGGTTCGAAACAGTGCCGATTAGTGACTCCGAGGGAATTTGGCGGTCGCCGGAGGTTATTGTCTGCTTTCTATGTTTTCTTTGAATTTGTGCAAGCGAAGCAGTCTTCGGCCTTGCTTAGCCATTCAGGCGGTGGAATTCAGTTCCATGGGGGCTTGAAGTGGTGTTAGAGCTTCGTCGGAGGAGAAGTTTAAAGAGGGGAAGTAAAGAAGGCGGTCACATGGATCGAACGAGGGTCGTTAGGCAGTCGGATTCGTCCCCAGACGTAGCAGTGGACACTACTCCGCTTCTGGGGAACGGGAATGGATCGCCGAATGCGAGCGAGGAAGGCGCCAGAAGTCTGTCACGGAGGGCGAGCATACAGGGTGCGGCGCGATTTCTGCGGAGGGCTAGCAGCCGTAGAATCATGAGGGAGCCCTCCATGCTGGTCCGAGAGACAGCCGCGGAACAGCTGGAGGAACGGCAGAGCGACTGGGCATATTCAAGGCCAGTGGTCGTCCTTGACATAATATGGAACCTGGCATTTGTTGTTGTGGCGACGGTGGTGCTCGTCCTCAGCAGGCACGAAAATCCTAACATGCCCGTTAGGGTTTGGGTTGTGGGCTATGCCCTTCAGTGCCTGCTGCACATGATTTGCGTTTGCTTTGAGTATAGAAGGCGACACAGCAGTGCACAGCAGCAGAGGAGCAATTCAGGAGGTCAGAGCGGGCATACTAATACTAATAATAATAATTCGGCGAACCAGCAGAGCCCCGGAGAGCAGCAGGAGTCGGACGATGCTACCGACGAGGAAGACGATGAAGGCTTGCCCACAGAGCGGACTAGCATAGCAAAGCGGTTGGAGTCTGCCAACACAATGTTTTCTTTTATATGGTGGATAGTTGGATTTTACTGGATATCTGCTGGTGGTCAGGTTTTAATTAATGAAGCTCCTCAGCTTTACTGGCTTTGCGTTGTGTTTCTGGCATTTGATGTATTTTTCGTAGTCTTCTGTGTGGCACTAGCCTGCGTAATTGGCATAGCTGTGTGCTGTTGCCTGCCATGCATTATTGCCATTTTGTATGCTGTGGCAGATCAGGAGGGGGCATCTGAAGAGGACATTGGCCTTCTTCCGAAATATAAATTCAAGTCCATTGGAGGTTCTGGAAAAATCAGTGGTGAGAAATCTGGGCCTTTCGGAGGAGTCATGAGTTTATCCACTGGAGAATCATCAAGTGAACGGGTTCTTTCTGCAGAGGATGCAGAGTGCTGCATTTGTCTGTCTACTTATGATGATGGTGTTGAATTACGGGAGCTTCCTTGTAGCCATCATTTTCATTGTACATGCATCGACAAATGGCTACGGATTAATGCTACATGTCCTCTTTGCAAATACAATATTATCAAGAGTAGCAATAATGCTAGGGAGGAGGTTTAACTTGTAAAGCCTTTTGTATGAGGTCTGTTTGCCAATGACTGAATTGTCACATGGTGCACTTGTATTTTGTATTGGAGATGATTACTTGAACCCTCAGTGATTTCGATGCAATTGTCTACGAAAGTAGGTCTGTTTTGTGTGTTTTGGAAGTTCTGCATGCAGTCATTTTAATTTCTAAATCACTCTACATTGATTTTTGAGAAATTCAAAGGCACATACTGAATAAGTGGAAGCTGCTTCTTTGGGAGATCAGTAGGTTGACAGAAGAGCAGCAGTGTCCAACTCTTAATAGTGTTTCTGGCACTCTACAAGGCTAGAGGCATATAGGATAGGATGTATTTTTGAGTCAAAATAGAGAATTAAATTATAATATACCCATTATTTTAAAATGTGTATAAGAAAGAGTTAGGAATGAGATAGGAATACTTCTTTATCTGTTTGGGAGTCTTTCCAGATTGTGGTAGAACTTTTCGAGGTGAATTGTGTTCTGATTGGTCGTGTTGGAGGTTATTATCGCACTCTCTTTTGCATCTTCTATGGTTGCTTCATTCTGATATTAGTTGCATCCGAGCCTTGTGTAAGTCTAGCTGAGCTTCACAATAGATTTGACACTTGTAATGATGCATGTGGTAGGAGACTTTGGAATGCTGTAGGAATACTTCTGCATCTGTTCCGGAGTCTTTCCAGATTTGTTGTAAAACATTATAAGGTGAATTTTGTCTGTCCTGATTGGTTGTGTTGGAGTTCTTTATCGTACTCTCTTTG

Ace file of the UniGene sp_v1.1_unigene20874

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cleavage and polyadenylation specificity factor, putative n=1 Tax=Ricinus communis RepID=B9RC56_RICCO	-	-	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein binding protein	-	-	74%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	74%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	74%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSJ7

Fln msg:

Fln protein: MDRTRVVRQSDSSPDVAVDTTPLLGNGNGSPNASEEGARSLSRRASIQGAARFLRRASSRRIMREPSMLVRETAAEQLEERQSDWAYSRPVVVLDIIWNLAFVVVATVVLVLSRHENPNMPVRVWVVGYALQCLLHMICVCFEYRRRHSSAQQQRSNSGGQSGHTNTNNNNSANQQSPGEQQESDDATDEEDDEGLPTERTSIAKRLESANTMFSFIWWIVGFYWISAGGQVLINEAPQLYWLCVVFLAFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASEEDIGLLPKYKFKSIGGSGKISGEKSGPFGGVMSLSTGESSSERVLSAEDAECCICLSTYDDGVELRELPCSHHFHCTCIDKWLRINATCPLCKYNIIKSSNNAREEV*

Protein Length: 400

Fln nts: ATGGGGAAACTGATTCGGTAAAACATTTTAACTGATAGAAGTGACTGCAACGTAAACGGATGAATCCACGCATCAATGGCTTCTGTAACGTCATAATTGCCATTACAGCGTCGAAGTAACCCCGGACCCCAACGCTCAAACCCTCGTGCATCTCTGCGGATAATGCAATCGTCTTAAAGATCTGTAATCTGTAAATAATCGACGAATTCTGTCGATCGGAGCAGCAACGTTAATATCAGTAGGGCGGCGAAATCTGGTTCGAAACAGTGCCGATTAGTGACTCCGAGGGAATTTGGCGGTCGCCGGAGGTTATTGTCTGCTTTCTATGTTTTCTTTGAATTTGTGCAAGCGAAGCAGTCTTCGGCCTTGCTTAGCCATTCAGGCGGTGGAATTCAGTTCCATGGGGGCTTGAAGTGGTGTTAGAGCTTCGTCGGAGGAGAAGTTTAAAGAGGGGAAGTAAAGAAGGCGGTCAC_-_ATGGATCGAACGAGGGTCGTTAGGCAGTCGGATTCGTCCCCAGACGTAGCAGTGGACACTACTCCGCTTCTGGGGAACGGGAATGGATCGCCGAATGCGAGCGAGGAAGGCGCCAGAAGTCTGTCACGGAGGGCGAGCATACAGGGTGCGGCGCGATTTCTGCGGAGGGCTAGCAGCCGTAGAATCATGAGGGAGCCCTCCATGCTGGTCCGAGAGACAGCCGCGGAACAGCTGGAGGAACGGCAGAGCGACTGGGCATATTCAAGGCCAGTGGTCGTCCTTGACATAATATGGAACCTGGCATTTGTTGTTGTGGCGACGGTGGTGCTCGTCCTCAGCAGGCACGAAAATCCTAACATGCCCGTTAGGGTTTGGGTTGTGGGCTATGCCCTTCAGTGCCTGCTGCACATGATTTGCGTTTGCTTTGAGTATAGAAGGCGACACAGCAGTGCACAGCAGCAGAGGAGCAATTCAGGAGGTCAGAGCGGGCATACTAATACTAATAATAATAATTCGGCGAACCAGCAGAGCCCCGGAGAGCAGCAGGAGTCGGACGATGCTACCGACGAGGAAGACGATGAAGGCTTGCCCACAGAGCGGACTAGCATAGCAAAGCGGTTGGAGTCTGCCAACACAATGTTTTCTTTTATATGGTGGATAGTTGGATTTTACTGGATATCTGCTGGTGGTCAGGTTTTAATTAATGAAGCTCCTCAGCTTTACTGGCTTTGCGTTGTGTTTCTGGCATTTGATGTATTTTTCGTAGTCTTCTGTGTGGCACTAGCCTGCGTAATTGGCATAGCTGTGTGCTGTTGCCTGCCATGCATTATTGCCATTTTGTATGCTGTGGCAGATCAGGAGGGGGCATCTGAAGAGGACATTGGCCTTCTTCCGAAATATAAATTCAAGTCCATTGGAGGTTCTGGAAAAATCAGTGGTGAGAAATCTGGGCCTTTCGGAGGAGTCATGAGTTTATCCACTGGAGAATCATCAAGTGAACGGGTTCTTTCTGCAGAGGATGCAGAGTGCTGCATTTGTCTGTCTACTTATGATGATGGTGTTGAATTACGGGAGCTTCCTTGTAGCCATCATTTTCATTGTACATGCATCGACAAATGGCTACGGATTAATGCTACATGTCCTCTTTGCAAATACAATATTATCAAGAGTAGCAATAATGCTAGGGAGGAGGTTTAA___CTTGTAAAGCCTTTTGTATGAGGTCTGTTTGCCAATGACTGAATTGTCACATGGTGCACTTGTATTTTGTATTGGAGATGATTACTTGAACCCTCAGTGATTTCGATGCAATTGTCTACGAAAGTAGGTCTGTTTTGTGTGTTTTGGAAGTTCTGCATGCAGTCATTTTAATTTCTAAATCACTCTACATTGATTTTTGAGAAATTCAAAGGCACATACTGAATAAGTGGAAGCTGCTTCTTTGGGAGATCAGTAGGTTGACAGAAGAGCAGCAGTGTCCAACTCTTAATAGTGTTTCTGGCACTCTACAAGGCTAGAGGCATATAGGATAGGATGTATTTTTGAGTCAAAATAGAGAATTAAATTATAATATACCCATTATTTTAAAATGTGTATAAGAAAGAGTTAGGAATGAGATAGGAATACTTCTTTATCTGTTTGGGAGTCTTTCCAGATTGTGGTAGAACTTTTCGAGGTGAATTGTGTTCTGATTGGTCGTGTTGGAGGTTATTATCGCACTCTCTTTTGCATCTTCTATGGTTGCTTCATTCTGATATTAGTTGCATCCGAGCCTTGTGTAAGTCTAGCTGAGCTTCACAATAGATTTGACACTTGTAATGATGCATGTGGTAGGAGACTTTGGAATGCTGTAGGAATACTTCTGCATCTGTTCCGGAGTCTTTCCAGATTTGTTGTAAAACATTATAAGGTGAATTTTGTCTGTCCTGATTGGTTGTGTTGGAGTTCTTTATCGTACTCTCTTTG

Fln Alignment:

sp_v1.1_unigene20874___MDRTRVVRQSDSSPDVAVDTTPLLGNGNGSPNASEEGARSLSRRASIQGXXXXXXXXXXXXXXXEPSMLVRETAAEQLEERQSDWAYSRPVVVLDIIWNXXXXXXXXXXXXXSRHENPNMPVRVWVVGYALQCLLHMICVCFEYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGXXXXXXXXXXXXXXXGLPTERTSIAKRLESANTMFSFIWWIVGFYWISAGGQVLINEAPQLYWXXXXXXXXXXXXXXXXXXXXXXIGIAVCCCLPCIIAILYAVADQEGASEEDIGLLPXXXXXXXXXXXXXXXXXXXPFGGVMSLSTGESSSERVLSAEDAECCICLSTYDDGVELRELPCSHHFHCTCIDKWLRINATCPLCKYNIIKSSNNAREEV
C0PSJ7_______________MDRTRVVRQSDSSPDVAVDTTPLLGNGTGSPNASDDGARSLSRRASIQGAARFLRRASSRRIMREPSMLVRETAAEQLEERQSDWAYSRPVVVLDIIWNLAFVVVATVVLVLSRHENPNMPVRVWVVGYALQCLLHMICVCFEYRRRHSNAQQQRSNSGGQSGHTNNNNNSANQQS-PGEQQESDDATDEEVDEVLSTERTSIAKRLESANTMFSFIWWIVGFYWISAGGQILTHDAPQLYWLCVVFLAFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVADQEGASEEDIGLLPKYKFKSIGGSEKISGEKSGPFGGIMNLCTGESSTERVLSAEDAECCICLSTYDDGVELRELPCSHHFHCTCIDKWLRINATCPLCKYNIIKSSNNAREEV

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
411			12	87	0.992554
415	87	12			0.992554
416		12	87		0.992554
418			87	12	0.992554
420			12	87	0.992554
421		12	87		0.992554
423			12	87	0.992554
424	87			12	0.992554
425		12	87		0.992554
427		25	75		1.0
432	12		87		0.992554
493		77	22		0.999999
516		88		11	0.923564
601	20		80		0.999996
619	10		90		0.90298
629		90		10	0.90298
673		20	80		0.999996
694	90		10		0.90298
703	18		81		0.999994
748			11	88	0.923564
852	20			80	0.995493
855			20	80	0.995493
919		87		12	0.992554
1261		93	6		0.999453
1686		12		87	0.999964
1692		12	87		0.999964
1697		87		12	0.999964
1718	86		13		0.999973
1722		13		86	0.999973
1791		15		84	0.999986
1845	63			36	1.0
2044	76		23		1.0
2054	10			90	0.90298
2055	11			88	0.923564
2089	83		16		0.994512
2304			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
974	986	TAA TAA TAA TAA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain