SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20827

Length: 2821 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20827
CGTCGTGACCTTGGCTGTCACTCAATAGTAAGTAGAACCGTCATGAATAGCATCACTTCCAGCAAATCTTCCAGCAAGGAACTCAGGCAAAAGCTATTAGGCCTCAAGCCTACCATTGATGAAATCTCTAGGATTTCTTCTGAATCAGACCCCTCATCTCACAGAGGCCCGCCGTTGAAGGACATTCAAGACAAGCTGCAAGATGGCCTTCGCCTTGTGAAGAAATTAGAGGGAATCAGCAGTTTTAATTTATATAGAAGATATCGATATGGAAAGAAAATCCTACAGGTAGAAAAGAATGTCAATGATTTTTTGCTCACCCAAGTCCTGGCAGGCATACTCGATGTCCACAAGCTAAACGTGGATTCCAAGGCCTGTGAGGAACGATTGAAGCGTATGGAAGAAATGGGTCGGCATATAATCGACAGTGTTAATGCCAAGATGACTAAGGATGCCATTTCCAATTCCCTCATGCTTCATCAAATGAGTACAGGCCAGTTATTCGAGACCTCCATTGATGAGTCCTATGATACTACAATTTCTAAAGAACCCACCAGCAGCTTCAACTCCCAAGTCCCGGAAATGCCGAATTTCGTAGTTGGATTGAATAATCTTGTGAATGATGTCAAGCAAAGCCTAATATTTCAGAATGGGGTTAATGTAGTTGGGGTAAAAGGTATGGGAGGAAGTGGCAAAACCACTCTTGCGTTAGCCCTTTGCAACGATCCCCAAGTCAAAGATTTCTTTCAGAACAATATAATTTTCATTACTGTTGCACATTCTCCAAATGTAAAGGGCCTTTTAGAGACTCTGTGGGATAAGATAATTGGTGGCAGAAGGCCTGATTTTCAGAGCATAGAGGATGCACACAACCAACTGAAGAATAATATTCGTTTAAAAGGACATCCAAAAACTTTGGTGGTTTTGGACGATGTTTGGTCAAGATCAAATGTGGAACAGTTGTTGTTTGAAGCAGAGGGATACAAGACAATTATCACAACAAGACAGGATTACACTATTCCGACTTCAAATAGTACCCGTGTCTATAACATACCCATGTTGCAGAAGGCTGATGCCCTGTCACTTTTCTGCTTTTGGGCGTTTGGACAACCTTCGATTCCAATAACAGAAGATGAGGATCTTGTTAAAATGGTTGAAGCAGAGTGTAAGGGCTTACCACTTGCCCTCAAGGTTATTGCAAGCTCTTTGCGCGGTGAGCCCCCGCCCGTTTGGGAAAATGCTAAGAAAAGACTTTCCAGAGGACAATCAATATCAGAATATCACAGAGATGAGCTTTTTCATTGCTTGGAAACAAGTATAGATGTCCTAGATGAGGAGTCGAAGCAGTGCTTTTTGGACTTGGGGGCATTTCCCAAAGGTAGAAAGTTCAGCGCAGATGCATTGTTGGACATTTGGGTTTACACCCGTGGGATGGAATGGCAAGATGCTTTTGTGGTCTTGTTAGAACTTGCAAGTCGTAGTCTGCTAAATCTCACAAGCGACCCAGGCTGTCGGGCCATCTCATTTGGCTGTGCCTCCGAGCTCTCTTTTTCTCAACATGATGTGATGCGAGATTTAGCCTTCCGTCTGGCCAACCAGGATAGTACCATTCATTGTAAGAGGCTTTTTATGCCTAGCAAGGAGGATAATATTCCCACAAAATGGCTAACGCTCAAAGATCAGGCATCTAAGGCTCAATTTATTTCAATTTATACAGGTCCAATGGAAGAGCAAAATTGGTGTCAAATAAACTTTCCTGAGGTGGAAGTATTGACTTTGTTTTTTGCTGCCAGTCGTTACTGTCTTCCTACATTTTTACATACCATGCCAAAACTGAAGGTTGCTATAATATACAATTACAGTTCTAAGCGTTCAACACTTCATGGGCTGCCGAGCTTCCCTGCATTTCCTCAAATAAAGTCTGTACTACTTGGGAGGTTGATTGTGTCTCCTCTTTATGAGTATTGTAGATCCTCAGAGAGCTTGGAAAAGTTGTCTGTATGCCTATGTGAGGGTTTGGGGAATATGACTTCATTGGATAAGGGACATGATTTTCCAACGTCTCCAAAATTTCAAGAAATTAACTTTGACCACTGCAGTGATTTGGAGGAACTGCCTGGAAACATATGCAATTTAACTTACCTCCAGAAGTTATCTGTCACTAATTGTCATCTTATCCAAAAGTTACCTGATGACTTTGGGAGGTTAAGGTCACTTAGGGTGCTGAGATTGTCTGCATGCCCAAGTTTGTCAATGCTTCCTCCTTCCATTTGTGCACTTCAGCGACTCGAATTTCTTGATATTTCATTATGCAGGTCTTTGAAGGACCTTCCCATGGAATTTGATCAGCTATCAAACTTAAAGATTCTGGATATGAGGGAGTGCTCTGGACTGAAGAAGCTGCCTAAAGCATTAGCCAAACTAAGATCTCTCAGATGTGTAATCTGTGATGAGAGCACTGAACGACAGTGGCTGGCTATCAAAGCCTCTACCATGCCTAATCTCGTAGTTGAGGTCATCGAAGAACGTTTTAATTTGGATTGGCTTGATGATTGAAAAAGTTCATGATGCCTCAACTTGGTTGCTTCAACGCCTTTAATTCAGTAACTTATGCTGGTGAATTGTCTAAATTTAAACAGAACAGAGGATTGCTTCTAAGATTGGACTGATTGTATTATGTTCTTAGAGCTTAGGGTTGTCGTGATATCCTAGGATGTTCCATGTTTTCTCAATTAACTTGTACATTACTGTATATATTCATACACTTTGAGCGCACTAACTCTTCTGAGAATAAATTGGTAATTATTTGGTTTTGACTTCT

Ace file of the UniGene sp_v1.1_unigene20827

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=1 Tax=Pinus lambertiana RepID=Q1L6F3_PINLA	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	leucine rich repeat family expressed	-	-	63%

Source	InterPros	Term	Type	Identity
Blast2go	Disease resistance protein	IPR000767	-	63%
Blast2go	NB-ARC	IPR002182	-	63%
Blast2go	Powdery mildew resistance protein, RPW8 domain	IPR008808	-	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKQ3

Fln msg:

Fln protein: MNSITSSKSSSKELRQKLLGLKPTIDEISRISSESDPSSHRGPPLKDIQDKLQDGLRLVKKLEGISSFNLYRRYRYGKKILQVEKNVNDFLLTQVLAGILDVHKLNVDSKACEERLKRMEEMGRHIIDSVNAKMTKDAISNSLMLHQMSTGQLFETSIDESYDTTISKEPTSSFNSQVPEMPNFVVGLNNLVNDVKQSLIFQNGVNVVGVKGMGGSGKTTLALALCNDPQVKDFFQNNIIFITVAHSPNVKGLLETLWDKIIGGRRPDFQSIEDAHNQLKNNIRLKGHPKTLVVLDDVWSRSNVEQLLFEAEGYKTIITTRQDYTIPTSNSTRVYNIPMLQKADALSLFCFWAFGQPSIPITEDEDLVKMVEAECKGLPLALKVIASSLRGEPPPVWENAKKRLSRGQSISEYHRDELFHCLETSIDVLDEESKQCFLDLGAFPKGRKFSADALLDIWVYTRGMEWQDAFVVLLELASRSLLNLTSDPGCRAISFGCASELSFSQHDVMRDLAFRLANQDSTIHCKRLFMPSKEDNIPTKWLTLKDQASKAQFISIYTGPMEEQNWCQINFPEVEVLTLFFAASRYCLPTFLHTMPKLKVAIIYNYSSKRSTLHGLPSFPAFPQIKSVLLGRLIVSPLYEYCRSSESLEKLSVCLCEGLGNMTSLDKGHDFPTSPKFQEINFDHCSDLEELPGNICNLTYLQKLSVTNCHLIQKLPDDFGRLRSLRVLRLSACPSLSMLPPSICALQRLEFLDISLCRSLKDLPMEFDQLSNLKILDMRECSGLKKLPKALAKLRSLRCVICDESTERQWLAIKASTMPNLVVEVIEERFNLDWLDD*

Protein Length: 839

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAGTAAGTAGAACCGTC_-_ATGAATAGCATCACTTCCAGCAAATCTTCCAGCAAGGAACTCAGGCAAAAGCTATTAGGCCTCAAGCCTACCATTGATGAAATCTCTAGGATTTCTTCTGAATCAGACCCCTCATCTCACAGAGGCCCGCCGTTGAAGGACATTCAAGACAAGCTGCAAGATGGCCTTCGCCTTGTGAAGAAATTAGAGGGAATCAGCAGTTTTAATTTATATAGAAGATATCGATATGGAAAGAAAATCCTACAGGTAGAAAAGAATGTCAATGATTTTTTGCTCACCCAAGTCCTGGCAGGCATACTCGATGTCCACAAGCTAAACGTGGATTCCAAGGCCTGTGAGGAACGATTGAAGCGTATGGAAGAAATGGGTCGGCATATAATCGACAGTGTTAATGCCAAGATGACTAAGGATGCCATTTCCAATTCCCTCATGCTTCATCAAATGAGTACAGGCCAGTTATTCGAGACCTCCATTGATGAGTCCTATGATACTACAATTTCTAAAGAACCCACCAGCAGCTTCAACTCCCAAGTCCCGGAAATGCCGAATTTCGTAGTTGGATTGAATAATCTTGTGAATGATGTCAAGCAAAGCCTAATATTTCAGAATGGGGTTAATGTAGTTGGGGTAAAAGGTATGGGAGGAAGTGGCAAAACCACTCTTGCGTTAGCCCTTTGCAACGATCCCCAAGTCAAAGATTTCTTTCAGAACAATATAATTTTCATTACTGTTGCACATTCTCCAAATGTAAAGGGCCTTTTAGAGACTCTGTGGGATAAGATAATTGGTGGCAGAAGGCCTGATTTTCAGAGCATAGAGGATGCACACAACCAACTGAAGAATAATATTCGTTTAAAAGGACATCCAAAAACTTTGGTGGTTTTGGACGATGTTTGGTCAAGATCAAATGTGGAACAGTTGTTGTTTGAAGCAGAGGGATACAAGACAATTATCACAACAAGACAGGATTACACTATTCCGACTTCAAATAGTACCCGTGTCTATAACATACCCATGTTGCAGAAGGCTGATGCCCTGTCACTTTTCTGCTTTTGGGCGTTTGGACAACCTTCGATTCCAATAACAGAAGATGAGGATCTTGTTAAAATGGTTGAAGCAGAGTGTAAGGGCTTACCACTTGCCCTCAAGGTTATTGCAAGCTCTTTGCGCGGTGAGCCCCCGCCCGTTTGGGAAAATGCTAAGAAAAGACTTTCCAGAGGACAATCAATATCAGAATATCACAGAGATGAGCTTTTTCATTGCTTGGAAACAAGTATAGATGTCCTAGATGAGGAGTCGAAGCAGTGCTTTTTGGACTTGGGGGCATTTCCCAAAGGTAGAAAGTTCAGCGCAGATGCATTGTTGGACATTTGGGTTTACACCCGTGGGATGGAATGGCAAGATGCTTTTGTGGTCTTGTTAGAACTTGCAAGTCGTAGTCTGCTAAATCTCACAAGCGACCCAGGCTGTCGGGCCATCTCATTTGGCTGTGCCTCCGAGCTCTCTTTTTCTCAACATGATGTGATGCGAGATTTAGCCTTCCGTCTGGCCAACCAGGATAGTACCATTCATTGTAAGAGGCTTTTTATGCCTAGCAAGGAGGATAATATTCCCACAAAATGGCTAACGCTCAAAGATCAGGCATCTAAGGCTCAATTTATTTCAATTTATACAGGTCCAATGGAAGAGCAAAATTGGTGTCAAATAAACTTTCCTGAGGTGGAAGTATTGACTTTGTTTTTTGCTGCCAGTCGTTACTGTCTTCCTACATTTTTACATACCATGCCAAAACTGAAGGTTGCTATAATATACAATTACAGTTCTAAGCGTTCAACACTTCATGGGCTGCCGAGCTTCCCTGCATTTCCTCAAATAAAGTCTGTACTACTTGGGAGGTTGATTGTGTCTCCTCTTTATGAGTATTGTAGATCCTCAGAGAGCTTGGAAAAGTTGTCTGTATGCCTATGTGAGGGTTTGGGGAATATGACTTCATTGGATAAGGGACATGATTTTCCAACGTCTCCAAAATTTCAAGAAATTAACTTTGACCACTGCAGTGATTTGGAGGAACTGCCTGGAAACATATGCAATTTAACTTACCTCCAGAAGTTATCTGTCACTAATTGTCATCTTATCCAAAAGTTACCTGATGACTTTGGGAGGTTAAGGTCACTTAGGGTGCTGAGATTGTCTGCATGCCCAAGTTTGTCAATGCTTCCTCCTTCCATTTGTGCACTTCAGCGACTCGAATTTCTTGATATTTCATTATGCAGGTCTTTGAAGGACCTTCCCATGGAATTTGATCAGCTATCAAACTTAAAGATTCTGGATATGAGGGAGTGCTCTGGACTGAAGAAGCTGCCTAAAGCATTAGCCAAACTAAGATCTCTCAGATGTGTAATCTGTGATGAGAGCACTGAACGACAGTGGCTGGCTATCAAAGCCTCTACCATGCCTAATCTCGTAGTTGAGGTCATCGAAGAACGTTTTAATTTGGATTGGCTTGATGATTGA___AAAAGTTCATGATGCCTCAACTTGGTTGCTTCAACGCCTTTAATTCAGTAACTTATGCTGGTGAATTGTCTAAATTTAAACAGAACAGAGGATTGCTTCTAAGATTGGACTGATTGTATTATGTTCTTAGAGCTTAGGGTTGTCGTGATATCCTAGGATGTTCCATGTTTTCTCAATTAACTTGTACATTACTGTATATATTCATACACTTTGAGCGCACTAACTCTTCTGAGAATAAATTGGTAATTATTTGGTTTTGACTTCT

Fln Alignment:

sp_v1.1_unigene20827___QDKLQDGLRLVKKLEGISSFNLYRRYRYGKKILQVEKNVNDFLLTQVLAGILDVHKLNVDSKACEERLKRMEEMGRHIIDSVNAKMTKDAISNSLMLHQMSTGQLFETSIDESYDTTISKEPTSSFNSQVPEMPNFVVGLNNLVNDVKQSLIFQXXXXXXXXXXXXXXXXTTLALALCNDPQVKDFFQNNIIFITVAHSPNVKGLLETLWDKIIGGRRPDFQSIEDAHNQLKNNIRLKG-----HPKTLVVLDDVWSRSNVEQLLFEAEGYKTIITTRQDYTIPTSNSTRVYNIPMLQKADALSLFCFWAFGQPSIPITEDEDLVKMVEAECKGLPLALKVIASSLRGEPPPVWENAKKRLSRGQSISEYHRDELFHCLETSIDVLDEESKQCFLDLGAFPKGRKFSADALLDIWVYTRGMEWQDAFVVXXXXXXXXXXXXTSDPGCRAIS-FGCASELSFSQHDVMRDLAFRLANQDSTIHCKRLFMPSKEDNIPTKWLTLKDQASKAQFISIYTGPMEEQNWCQINFPEVEVLTLFFAASRYCLPTFLHTMPKLKVAIIYNYSSKRSTLHGLPSFPAFPQIKSVLLGRLIVSPLYEYCRSSESLEKLSVCLCEGLGN--MTSLDKGHDFPTSPKFQEINFDHCSDLEELPGNICNLTYLQKLSVTNCHLIQKLPDDFGXXXXXXXXXXXACPSLSMLPPSICALQRLEFLDISLCRSLKDLPMEFDQLSNLKILDMRECSGXXXXXXXXXXXRSLRCVICDESTERQWLAIKASTMPNLVVEVIEERFNLDWLDD
B8LKQ3_______________KDLLKAGFEEVENIERTRRFDFIARYQDGRRILKFLKKLKNFIELHGPPSLILTKKLEADWRARDADLKGCFE---HLVEIVNAGMTNNSVSNITMLQRFDT-------VDGTLEATASQQ-SISYTYQVPDIPNFVVDLYNRIDNVKQ-LLLQNDVNIVGVTGMGGSGKTTLASALCDDTQVKEFFRNKIIFITVSQSPNVKGLLDTMWLKIIDLPKPDFQSTEDAHNQLQKALTLKNLSSETYRPILVVLDNVWSRADLEHFLFEAKGYKTIYTTRENFAIPITDGRRQYEMPMLNNEDSLKLFCFWAFDQHSIPTNEYEDLVQQVAAGCNGLPLALTVIGSCLRDQPWPVWKSAKEKLSRAESISSYHREKVLERLETSIDVLRDDSRQCFLDLGAFPKGRKFSVDALLDIWVYVRGMEWNDAFAVFLELAKGNLLNLTSDRGSQAISGYSCASHISFFQHDVMRDLAFNLAIQDSTNYCSRLFMSRKEDNIPTEWISLKEQTSKAQFVSIHTGQM-EQEWGQIHFPEVETLALFFEASQYRLPTFLRTMPKLKVVIIYNYSSKRAKLHGLPSFSLFTQIKSVVLERLDVSALYGYCRSSESLEKFSLCLCEGFGNTPLPSLEK-FSVIQFPKFIEINFDHCSDLEQLPEKICNLTSLQRLSVTNCHLIQKLPDDLGKLRSLRMLRLSACLNLSMLPASICELHQLECLDISLCGSLKNFPNEFHRLSKLKMLDMRECSGLKKLPEALTKLRSLTRVTCDEHTERQWLSIKASAMPNLIIVVVKECFNLDWLEN

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
22		66	33		0.997452
23			33	66	0.997452
24		66	33		0.997452
25	66		33		0.997452
241	40		60		1.0
424	72		27		1.0
534		12		87	0.992554
544		14		85	0.993533
545		85	14		0.993533
546		14		85	0.993533
548	85		14		0.993533
549	85			14	0.993533
552	85		14		0.993533
553		85		14	0.993533
554		85	14		0.993533
558	11	88			0.923564
559	88		11		0.923564
562	88	11			0.923564
563	11		88		0.923564
566			11	88	0.923564
567	11	88			0.923564
568	88		11		0.923564
572		88	11		0.923564
1294		16		83	0.994512
1436	85			14	0.993533
1499	85		14		0.993533
1517	14	85			0.993533
1761	10	90			0.90298
1764	90		10		0.90298
1789			10	70	0.999998
1790			90	10	0.90298
1970		16		83	0.994512
1993	83			16	0.994512
1994	80		20		0.995493
1995	80		20		0.995493
2123	14		85		0.993533
2138			12	87	0.992554
2139			12	87	0.992554
2140	87		12		0.992554
2212	87	12			0.999964
2214		12	87		0.999964
2606		90	10		0.999898
2767		58		41	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain