SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20777

Length: 2223 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20777
CGTCGTGACCTTGGCTGTCACTCATCTTCTCAACAGCACTCACTACCATCTTCTCAACAGTTTCACTCACACCAGACACAGCTGCTGGCCCCGTCACAACAGCATGTGCACAATCAATATCCACAGTTTCTTCATTCACAGCATCTACAACAGTCAATTCAGTTGCCTGAGTTACGAGGGCAGTTGTTGCAGTCAACTTCTAGTCGATCCCAGGCGGCAGCAAACATGCCCTTATCGACGAAAGCTCAGTCTGGATTTACTGAGACTGATGCCCCTTCTTGTTCGACATCAACATCTGCAAATAGTTACCCACTGCAGAATATCTTAACTCGTGCAAATCAATCTGCAATTATGAGTGAGGAAAAACCTCAATGTGCAAACATGCCAAGGCATAGTGCAAGTAGCACACAAGCTGCACTTCCTGCTTCTAACTTCTTGGGAGATCCTCAGGTCACTTCATTGTTACCTTCTATAAAAGAACCAAATCAGGCTGCATTGCAGACTTATATGAGTGCTCAAATGGGTCAGATGGAGGCGTCATCATCTTCTGGAACTTCATATTCTCTTACTCCTGATGCTTCCATTTCACAAAATTTACCGTTGCTACCTCTCCAGTCATCTCCATTCTTGCTTCAAGATGTTTCTCATGACAATGACATTCAGACTGATCCCAGAAGGAACGTTCTCCCTACCTTCAGCAATGGCAAGGATATCCAAGCGCATGCCTCAGCAACGATAAGTTCACAAACATTTAGTGTTCCAGATCTGCCATTGAACTCGGGGGTTACAAGTGATCTGGGAATCAGTGATAGCAGTATCTTGCAGAGAGGAGGGTCCTGGCAGCAACCCCCTCCACCTGTGAGGACCTATACCAAGGTATACAAGCTTGGTTCAGTTGGTAGGTCAATTGATGTCACACGATGCAAAAACTATGATGAACTTCGACGTGAGCTCGCTCGTATGTTTGGTCTAGAAGGTCAGCTTGAAGATCCTCATCGGTCAAGTTGGCAGCTTGTGTTTGTGGACAATGAGAATGATGTACTTCTTGTTGGAGATGATCCTTGGGAGGAATTCGTGAGTTGTGTCCGATGCATCAGAATACTGTCACCTTCAGAAGTCTTGCAAATGAGTCAGGAGGGCACACTCTTAAACAGTTTACCACTACAGCAACAAGCTGGTAGCAGCTCTGATGGTGGCATTGTGTGGAGGGATCACTGTGACCAGAATTCTACCAATCCCTCAGTAGGATCTTTCGAATATTAGTGCCCAAATGGTATTGTCATTTGTCATTGTGGAGCAGCGCAGAGTTGCCTTTCTTGGAAATAAATGATATTTTATGGTGCACCAACATAGTTTCAAAGATCATTTCCTGTGCACCATCTGAAGATGTGCTTTATGCACATCAAAATTAAGTGGAACTGTTTTCTTGAATATTGAATGGTATGTGGCAATTCAGTGACTAACACTTCATATGTTATGTCAGAAGAGCTACTGTGACCAGTGGGCAGTGGAAGGTCTCATGAAAATTTCCCAGGTTGTATTCAAGAGAAACGTTGGATCTTTTATTTCATTCTTTTGCATCGAGCAGGAGTTCAGCATATGACATGTGACATCAACAGTTCGAGGTAATTTTGCCAGAAGGACAAAAAGATACCACTGCTTCTGACCACTTTTTGGCTGTACACTCGTTTGATTGCCAGGATGTAATATGGAGGTTTTCACAGCATTTCCATCTCAAACGTGCGTGGGTGGATGTTGGAGCTGATTACAAGGGGAATTTGAAGTAAAGTAACCCCAGTAAGAATGATGATAATAGAACTTTTGAAATTTTGTCTATGCATGATCGTTATTGCTAAGTACGGGTGAAGTTGTAGATGCAAACCACGAGGCATCTGCTGATATGAGAGCATTGTTACGCAATTCCAATGAAACATGGAAAATATGTTTCTGTGTACATACATCTTTGAATGAAGGCATTTCATCTTGTTCACAACTTGCTGTTTGTATTCTGAAATATTTGTGTTTCTTGGCATAGTTGAGGGATTTTTACTCCGATGTTTCCTGAATGAATGCATAAGCCATACGNTTTCATTTATGGCAGAATGGTACGATTATAAAATTATTTGAACAGCTTTGGATGCCTTCGATGTATGAACATGAGCAATTGTCAATACTGCTGTACTATTTCATCTTTTAATCATCATTGTAATCCAAGATGAGGTT

Ace file of the UniGene sp_v1.1_unigene20777

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AUX_IAA domain containing protein	-	-	6.0e-25	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	auxin response	-	-	0.0	60%

Source	GOs	Term	Type	Identity
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	60%
Blast2go	leaf development	GO:0048366	Biological Process	60%
Blast2go	response to ethylene stimulus	GO:0009723	Biological Process	60%
Blast2go	lateral root primordium development	GO:0010386	Biological Process	60%
Blast2go	DNA binding	GO:0003677	Molecular Function	60%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	60%
Blast2go	nucleus	GO:0005634	Cellular Component	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AUX/IAA protein	IPR003311	-	0.0	60%
Blast2go	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTP3

Fln msg: your sequence is shorter than subject: 421 - 450

Fln protein: RRDLGCHSSSQQHSLPSSQQFHSHQTQLLAPSQQHVHNQYPQFLHSQHLQQSIQLPELRGQLLQSTSSRSQAAANMPLSTKAQSGFTETDAPSCSTSTSANSYPLQNILTRANQSAIMSEEKPQCANMPRHSASSTQAALPASNFLGDPQVTSLLPSIKEPNQAALQTYMSAQMGQMEASSSSGTSYSLTPDASISQNLPLLPLQSSPFLLQDVSHDNDIQTDPRRNVLPTFSNGKDIQAHASATISSQTFSVPDLPLNSGVTSDLGISDSSILQRGGSWQQPPPPVRTYTKVYKLGSVGRSIDVTRCKNYDELRRELARMFGLEGQLEDPHRSSWQLVFVDNENDVLLVGDDPWEEFVSCVRCIRILSPSEVLQMSQEGTLLNSLPLQQQAGSSSDGGIVWRDHCDQNSTNPSVGSFEY*

Protein Length: 422

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTCTCAACAGCACTCACTACCATCTTCTCAACAGTTTCACTCACACCAGACACAGCTGCTGGCCCCGTCACAACAGCATGTGCACAATCAATATCCACAGTTTCTTCATTCACAGCATCTACAACAGTCAATTCAGTTGCCTGAGTTACGAGGGCAGTTGTTGCAGTCAACTTCTAGTCGATCCCAGGCGGCAGCAAACATGCCCTTATCGACGAAAGCTCAGTCTGGATTTACTGAGACTGATGCCCCTTCTTGTTCGACATCAACATCTGCAAATAGTTACCCACTGCAGAATATCTTAACTCGTGCAAATCAATCTGCAATTATGAGTGAGGAAAAACCTCAATGTGCAAACATGCCAAGGCATAGTGCAAGTAGCACACAAGCTGCACTTCCTGCTTCTAACTTCTTGGGAGATCCTCAGGTCACTTCATTGTTACCTTCTATAAAAGAACCAAATCAGGCTGCATTGCAGACTTATATGAGTGCTCAAATGGGTCAGATGGAGGCGTCATCATCTTCTGGAACTTCATATTCTCTTACTCCTGATGCTTCCATTTCACAAAATTTACCGTTGCTACCTCTCCAGTCATCTCCATTCTTGCTTCAAGATGTTTCTCATGACAATGACATTCAGACTGATCCCAGAAGGAACGTTCTCCCTACCTTCAGCAATGGCAAGGATATCCAAGCGCATGCCTCAGCAACGATAAGTTCACAAACATTTAGTGTTCCAGATCTGCCATTGAACTCGGGGGTTACAAGTGATCTGGGAATCAGTGATAGCAGTATCTTGCAGAGAGGAGGGTCCTGGCAGCAACCCCCTCCACCTGTGAGGACCTATACCAAGGTATACAAGCTTGGTTCAGTTGGTAGGTCAATTGATGTCACACGATGCAAAAACTATGATGAACTTCGACGTGAGCTCGCTCGTATGTTTGGTCTAGAAGGTCAGCTTGAAGATCCTCATCGGTCAAGTTGGCAGCTTGTGTTTGTGGACAATGAGAATGATGTACTTCTTGTTGGAGATGATCCTTGGGAGGAATTCGTGAGTTGTGTCCGATGCATCAGAATACTGTCACCTTCAGAAGTCTTGCAAATGAGTCAGGAGGGCACACTCTTAAACAGTTTACCACTACAGCAACAAGCTGGTAGCAGCTCTGATGGTGGCATTGTGTGGAGGGATCACTGTGACCAGAATTCTACCAATCCCTCAGTAGGATCTTTCGAATATTAG___TGCCCAAATGGTATTGTCATTTGTCATTGTGGAGCAGCGCAGAGTTGCCTTTCTTGGAAATAAATGATATTTTATGGTGCACCAACATAGTTTCAAAGATCATTTCCTGTGCACCATCTGAAGATGTGCTTTATGCACATCAAAATTAAGTGGAACTGTTTTCTTGAATATTGAATGGTATGTGGCAATTCAGTGACTAACACTTCATATGTTATGTCAGAAGAGCTACTGTGACCAGTGGGCAGTGGAAGGTCTCATGAAAATTTCCCAGGTTGTATTCAAGAGAAACGTTGGATCTTTTATTTCATTCTTTTGCATCGAGCAGGAGTTCAGCATATGACATGTGACATCAACAGTTCGAGGTAATTTTGCCAGAAGGACAAAAAGATACCACTGCTTCTGACCACTTTTTGGCTGTACACTCGTTTGATTGCCAGGATGTAATATGGAGGTTTTCACAGCATTTCCATCTCAAACGTGCGTGGGTGGATGTTGGAGCTGATTACAAGGGGAATTTGAAGTAAAGTAACCCCAGTAAGAATGATGATAATAGAACTTTTGAAATTTTGTCTATGCATGATCGTTATTGCTAAGTACGGGTGAAGTTGTAGATGCAAACCACGAGGCATCTGCTGATATGAGAGCATTGTTACGCAATTCCAATGAAACATGGAAAATATGTTTCTGTGTACATACATCTTTGAATGAAGGCATTTCATCTTGTTCACAACTTGCTGTTTGTATTCTGAAATATTTGTGTTTCTTGGCATAGTTGAGGGATTTTTACTCCGATGTTTCCTGAATGAATGCATAAGCCATACGaTTTCATTTATGGCAGAATGGTACGATTATAAAATTATTTGAACAGCTTTGGATGCCTTCGATGTATGAACATGAGCAATTGTCAATACTGCTGTACTATTTCATCTTTTAATCATCATTGTAATCCAAGATGAGGTT

Fln Alignment:

sp_v1.1_unigene20777___RTYTKVYKLGS-VGRSIDVTRCKNYDELRRELARMFGLEGQLEDPHRSSWQLVFVDNENDVLLVGDDPWEEFVSCVRCIRILSPSEVLQMSQE
C0PTP3_______________RSCTKVHKQGSALGRAVDLTKFEGYTELIRELEQMFNIEGELEDPNKG-WQVVYTDNEGDMMLVGDDPWQEFCSIVRKIYIYTREEVEKMTPQ

SNPs (tot: 62)

Position	A %	C %	G %	T %	Probability
91		66	33		0.997452
92		66		33	0.997452
96		66	33		0.997452
99	66	33			0.997452
100	66			33	0.997452
101		66		33	0.997452
102	66		33		0.997452
110	33		66		0.997452
112	66			33	0.997452
152	66		33		0.997452
1453		14	85		0.993533
1456	71		14		0.984337
1457		14		85	0.993533
1461	14		85		0.993533
1463	85	14			0.993533
1464	85			14	0.993533
1466			14	85	0.993533
1468	85			14	0.993533
1471		14	85		0.993533
1503			12	87	0.992554
1504	87			12	0.992554
1514			85	14	0.993533
1519		85		14	0.993533
1520		14	14		0.984337
1522		14	85		0.993533
1524	16		83		0.994512
1572	80		20		0.995493
1588		20		80	0.995493
1673	16		83		0.994512
1702	14		85		0.993533
1704			14	85	0.993533
1705			14	85	0.993533
1731		14		85	0.993533
1732			14	85	0.993533
1735	85		14		0.993533
1736		85		14	0.993533
1737	85		14		0.993533
1738	14		85		0.993533
1740	85	14			0.993533
1743			14	85	0.993533
1744		85	14		0.993533
1748		85	14		0.993533
1752	85	14			0.993533
1753	85			14	0.993533
1756	14			85	0.993533
1816			85	14	0.993533
1817	85		14		0.993533
1818	85		14		0.993533
1819			14	85	0.993533
1834		14		85	0.993533
1835			14	85	0.993533
1837		14		85	0.993533
1839	85			14	0.993533
1840	85		14		0.993533
1842		14		85	0.993533
1843		14		85	0.993533
1847			14	85	0.993533
1850	85		14		0.993533
1856	14		85		0.993533
2026	90	10			0.90298
2046	88		11		0.923564
2101		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain