SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20702

Length: 1467 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20702

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	60S ribosomal protein L7a n=11 Tax=Poaceae RepID=RL7A_ORYSJ	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	60s ribosomal protein l7a	-	-	94%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L7A/L8	IPR001921	-	94%
Blast2go	Ribosomal protein L7Ae conserved site	IPR004037	-	94%
Blast2go	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	94%
Blast2go	Ribosomal protein L7Ae/L8/Nhp2 family	IPR018492	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADJ2

Fln msg:

Fln protein: MAPKRGVKAPAAAKKKVPKVVNPLFEKRTKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRVLKQRLKVPPALNQFTKTLDKNLASNLFKMLLKYRPEDKAAKKERLLKKAQAEAEGKTVEVKKPIVVKYGINHVTYLIEQSKAQLVVVAHDVDPIELVVWLPALCRKMNIPYAIVKGKARLGSIVHKKTATALCLTSVKNEDKMEFSKIVEAVKANFNDKFDEYRRQWGGGIMGTKSQAKTKAKEKLVAKEAAQRLT*

Protein Length: 260

Fln nts: ATGGGGACTTCAGCATTCCCCCCTTATTCATTGCACATCTGGGTGGAATTGCTAATTATAATTGTGTTAGTATAAAATTAATTTAACCAACGATAATCTAAAAACACTATCGTTTTCCCATTGGTTTCCCCACCATTTATCGTGCCCTGACTTAACCCAGGGTCAGAGATTTGACCCTAGACTCAGAAGAGTAGTTAGTCTAGCGGTGGTAAGGGTTTGTAGAATCAGGGTTTAGGAGGAGGGCTGTGTAAAAGGAACAAACAGCTTAATACTTTGCTATTGACATGCGCGTGTAAGGAGGTACCAGGTTAGTTAGCAGAGTGAGGCAGAGAGAGGAAGCAGATCGATTCCAGCA_-_ATGGCTCCGAAGAGAGGGGTTAAGGCTCCCGCTGCTGCGAAGAAGAAGGTCCCGAAGGTTGTTAATCCATTGTTCGAAAAGCGGACCAAGCAGTTTGGGATTGGGGGAGCTCTGCCACCAAAGAAGGATTTGCACAGATTCGTGAAATGGCCGAAGGTCGTACGCATCCAGAGGCAGCGGAGGGTATTGAAGCAGCGTTTGAAGGTTCCTCCGGCCTTAAACCAGTTCACCAAGACCCTTGACAAGAATCTCGCTTCCAACCTTTTCAAGATGCTTTTAAAATATAGGCCGGAAGATAAAGCTGCAAAGAAGGAAAGGCTTCTGAAAAAGGCTCAGGCTGAGGCAGAAGGGAAGACTGTTGAAGTGAAAAAGCCTATTGTTGTGAAATATGGAATTAATCATGTAACATACCTTATTGAGCAGAGTAAAGCTCAATTGGTAGTCGTTGCACATGATGTTGATCCAATTGAGTTGGTAGTGTGGCTTCCTGCACTTTGTAGAAAAATGAACATTCCTTATGCAATTGTCAAGGGGAAAGCACGTCTTGGATCGATTGTGCACAAAAAAACAGCAACAGCCTTGTGCTTGACTTCTGTGAAGAATGAGGACAAGATGGAATTTAGCAAGATTGTTGAGGCAGTAAAGGCTAACTTCAATGACAAGTTTGATGAGTATCGGCGACAATGGGGAGGTGGCATTATGGGAACCAAATCTCAGGCAAAAACAAAGGCCAAGGAAAAACTTGTGGCCAAGGAAGCAGCACAGAGGCTCACTTAA___GAATAATTCCTCGGATATTTTTTTTTCATTTGGACTTTTTTATTGGATTGTCTTTTGCAGAGTCCGTTGTAATTTGATTTATAGGTATAGTAATGTGTCAGAGTTTATACTAATGAATTCTTTAAGCCAATTTTAGCTTAAGGCTCAGAAAACATGTCAATTTTGCAACTGGATAAATTGTTGAGTAAACAGTATTTCGTACACATTCATTAGCCATATGCATTTTCTCTACAACTTTTTGTATGCTGTGATGATGATATCTTCATTTTGCCCTTCTGTATGTTAGTGCTGTTGATATTTATTGCTATATACTTAAGCATGTACAGTGTTTAAAT

Fln Alignment:

sp_v1.1_unigene20702___MAPKRGXXXXXXXXXXXXXXXNPLFEKRTKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALNQFTKTLDKNLASNLFKMLLKYRPXXXXXXXXXXXXXXXXXXXGKTVEVKKPIVVKYGINHVTYLIEQSKAQLVVVAHDVDPIELVVWLPALCRKMNIPYAIVKGKARLGSIVHKKTATALCLTSVKNEDKMEFSKIVEAVKANFNDKFDEYRRQWGGGIMGTKSQXXXXXXXXXXXXXXXQRLT
D5ADJ2_______________MAPKRGVKAPAAAKKKVPKVVNPLFEKRQKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRVLKQRLKVPPALNQFTKTLDKNLAANLFKMLLKYRPEDKAAKKERLLKKAQAEAEGKTVEVKKPIVVKYGINHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMNIPYAIVKGKARLGAIVHKKTATALCLTSVKNEDKMEFSKIVEAVKANFNDKFDEYRRQWGGGIMGTKSQAKTKAKEKLVAKEAAQRLT

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
279			25	75	1.0
345	81		18		1.0
700	87		12		0.992554
703		12		87	0.992554
737		12		87	0.992554
1363		85		15	1.0
1366		11		88	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain