SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20687

Length: 278 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene20687
TGTACTTGACCTTGGCTGTCACTCATTATTGTGAGAGTTCTTTTTGATAAAACTTCCAAAAGTCCCTTCCCTCCATCTAAAGATGGAAAAGAATCCAAGTACAGATCCTATTGTGATTATTTTGAGAAAAGATATCAAAGGCAACTCAAACATGTCAACCAACCTCTTCTACTACTGAAGCAGACTCATCGCCCTTACAATCTCCTTGTCAACCATATTGACGTTAAAGAAAAGACCAGGTTCCAACATTGAAGTCAATGAAGCTAATTATGTAGAGC

Ace file of the UniGene sp_v1.1_unigene20687

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dicer-like 3 n=1 Tax=Physcomitrella patens RepID=B3SRQ0_9BRYO	-	-	3.0e-08	46%
FL-Next	sp=Endoribonuclease Dicer homolog 3a; Oryza sativa subsp. japonica (Rice).	-	-	0.0	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5N870

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 660 aas, your sequence is shorter than subject: 84 - 1651

Fln protein: CT*PWLSLIIVRVLFDKTSKSPFPPSKDGKESKYRSYCDYFEKRYQRQLKHVNQPLLLLKQTHRPYNLLVNHIDVKEKTRFQH*

Protein Length: 85

Fln nts: TGTACTTGACCTTGGCTGTCACTCATTATTGTGAGAGTTCTTTTTGATAAAACTTCCAAAAGTCCCTTCCCTCCATCTAAAGATGGAAAAGAATCCAAGTACAGATCCTATTGTGATTATTTTGAGAAAAGATATCAAAGGCAACTCAAACATGTCAACCAACCTCTTCTACTACTGAAGCAGACTCATCGCCCTTACAATCTCCTTGTCAACCATATTGACGTTAAAGAAAAGACCAGGTTCCAACATTGAAGTCAATGAAGCTAATTATGTAGAGC

Fln Alignment:

sp_v1.1_unigene20687___SPFPPSKDGKESKYRSYCDYFEKRYQRQLKHVNQPLLLLKQTHRPYNLL
Q5N870_______________SAFDGASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain