SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20667

Length: 2232 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20667
CGTCGTGACCTTGGCTGTCACTCAACTCTATTCGAACCCGTGACCTTGGAGAATCCAAGTAGCACAGGGAGAATCTAATCTGTCATACGGTTTGTAATGGGGCCGTGCTGTTGATTTAACGCAGTGGATCTTTCGGTGCTCTCAATTTATTGTTTCCGTGGTGGATTCGTACGTTGATGGTGGATGGTTCCGTGGAGAATTATATGTGCGAAGAATAATTCCTGGGACTTGCGAAATCGTCATCTCTGATTGCACGGGCGGTGTTGGGGCGGTGTCTGGCCTCCCTCGATTTTAGATTTTAGTGCAAGAATTCAAAGCAGTAATTTTGTTCCAGCGGACTTTCAATAATGGAGAGCGTTTTACTGTTACGGATTTTCGATAACGGCAATCGCGCTTCAGGTTGTCAGCGCGAATTCTAAGGAAGCAGAAGTGCCTGATTAGCTTTCAAAGTGGCTCAAGCCTGCTGTAACTCGTCTAAAAATACTTATCTTACGACCTCTTTAGGCTTTTCTGGCGCGCTTTCGGCTTCGCAATTACGTATAGGTAGCAAGGGTTATGGCTCAGAGTTCTACCGAGTTCGATTCTTCATGGATATCTGCGTCTCCTCCCTCGTACGAGCAATCTATGCAACTCCTTCATGAAAACTGCGCACCTGTTGGCTGCTCAAACAAACTCGAAGTTTCGCTCAATCCATCTCTCAGCCGTTCGGTTTCCCGTAAAGACTTTCCCAAGCCTCCTCCTCCGCCAAGTCCGGATTATAAACACTTCCGTTTGCAGAACATATTTTCCGTAACTCATTTCTGCAACAGGTATCCGGGTTACAACTGTGTGCCAAAAGGGACGGCGGACACATGGAATAAGCTTTTTCAAGAAGGATACAAAGCTGATGTGCAAATTTTCACTTGTGATGGTCGCGTTATACCGGCTCACAGCAATGTGCTTGGCATTGCTTCTCCAGTGCTGAAGAACCTTTTGAAACAACAAACGGTGAAATCTGTGAAATCTCGCCTCCGTAGCTTCACGATTACAGGGGCTCCGTACGATGCAGTTAGGGCTTTCATATGCTTCCTTTATTCATCAAGGTATGAACAAGAAGATATGAAGAAATATGTCCTCCATCTATTAGTACTGGCACATGTGTTTTCGGTACCATCATTGAAACTAGTGTGCACACAAAATTTGGAGCATGGATTGCTCACAACAGATAATGTTATTGATGTATTACAACTGGCAAGATTATGTGATGCACCACGCTTGAATCTGTTATGCACCCGCCTTATTGTGAAGAACTTCAAAACTGTAGCAAAGTCAGAGGGATGGAAAGTGATGAGACAGTCCAATCCTAAGCTGGAGCAAGAGCTTTTAGAATCTGTCGTTGAGGCTGATTCTAGAAAACAAGAGAGGCTTCGGAAGATAGAGGAGAAGAAGATATACCTACAACTATATGATGCCATGGAAGCACTTGTTCACATATGCAGAGATGGCTGTCGAACAATAGGGCCTCATGACAAGGATTTAGATGAAAATCAAGGGCCTTGCAATTTCCCAGCCTGCAAAGGGCTTGAATCGTTAGTCCGACATTTTGCTGCCTGCAAAACTAGAGTTCCCGGAGGATGTGTACATTGCAAAAGAATGTGGCAACTGCTTGAACTACATTCAAGAATGTGTTCAGAGCCAGACATCTGCAAGGTTCCTCTTTGCAGGCACTTCAAAGAAAAAGTCCAACAACAAACCAAGAAGGATGAGGTGAAATGGAAGGTGTTGGTGAGCAAAGTCATGGTAGCCAAAAAGGCTGTCAATTCATTTTCGGCTTCTGCTGCTGTTAGCGTTCCAGTGTAGAGAATCTTGCTCTTGGTGCTCGATACATTTCCTTGTATTATAGTTCCATATACTCGTTTCATTTTTTTTCTTCTAAAAATGAATTATGGGTTTTGGCTTGGACAAAAATGATAGGTTACAGTGATTTTACAGTGTTTGAAACTGAGTTGAAGGCTTTAAGATATGCCTATTCTGCTAGAGGGTATAGGTTCCGGTGTCTTTTGTATTGTGTACTGCCTTTGCCTTGTGTTAATAAATTGGATGGCATCCTGAGAGGCTATGTGCAACGAATTTTTTATTTGTGAATATTATACTATTATTCCAGTGAACGATGCCCATGGGGAAGAAATAATGGAAGTCATGCTATTATTCCCTATTTTTTCCATATCCTTTTGCTATGGCCATTATTTCTTG

Ace file of the UniGene sp_v1.1_unigene20667

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	btb and taz domain protein 4	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	response to gibberellin stimulus	GO:0009739	Biological Process	79%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	cytoplasm	GO:0005737	Cellular Component	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPG7

Fln msg: your sequence is longer than subject: 428 - 249

Fln protein: MAQSSTEFDSSWISASPPSYEQSMQLLHENCAPVGCSNKLEVSLNPSLSRSVSRKDFPKPPPPPSPDYKHFRLQNIFSVTHFCNRYPGYNCVPKGTADTWNKLFQEGYKADVQIFTCDGRVIPAHSNVLGIASPVLKNLLKQQTVKSVKSRLRSFTITGAPYDAVRAFICFLYSSRYEQEDMKKYVLHLLVLAHVFSVPSLKLVCTQNLEHGLLTTDNVIDVLQLARLCDAPRLNLLCTRLIVKNFKTVAKSEGWKVMRQSNPKLEQELLESVVEADSRKQERLRKIEEKKIYLQLYDAMEALVHICRDGCRTIGPHDKDLDENQGPCNFPACKGLESLVRHFAACKTRVPGGCVHCKRMWQLLELHSRMCSEPDICKVPLCRHFKEKVQQQTKKDEVKWKVLVSKVMVAKKAVNSFSASAAVSVPV*

Protein Length: 429

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTCTATTCGAACCCGTGACCTTGGAGAATCCAAGTAGCACAGGGAGAATCTAATCTGTCATACGGTTTGTAATGGGGCCGTGCTGTTGATTTAACGCAGTGGATCTTTCGGTGCTCTCAATTTATTGTTTCCGTGGTGGATTCGTACGTTGATGGTGGATGGTTCCGTGGAGAATTATATGTGCGAAGAATAATTCCTGGGACTTGCGAAATCGTCATCTCTGATTGCACGGGCGGTGTTGGGGCGGTGTCTGGCCTCCCTCGATTTTAGATTTTAGTGCAAGAATTCAAAGCAGTAATTTTGTTCCAGCGGACTTTCAATAATGGAGAGCGTTTTACTGTTACGGATTTTCGATAACGGCAATCGCGCTTCAGGTTGTCAGCGCGAATTCTAAGGAAGCAGAAGTGCCTGATTAGCTTTCAAAGTGGCTCAAGCCTGCTGTAACTCGTCTAAAAATACTTATCTTACGACCTCTTTAGGCTTTTCTGGCGCGCTTTCGGCTTCGCAATTACGTATAGGTAGCAAGGGTT_-_ATGGCTCAGAGTTCTACCGAGTTCGATTCTTCATGGATATCTGCGTCTCCTCCCTCGTACGAGCAATCTATGCAACTCCTTCATGAAAACTGCGCACCTGTTGGCTGCTCAAACAAACTCGAAGTTTCGCTCAATCCATCTCTCAGCCGTTCGGTTTCCCGTAAAGACTTTCCCAAGCCTCCTCCTCCGCCAAGTCCGGATTATAAACACTTCCGTTTGCAGAACATATTTTCCGTAACTCATTTCTGCAACAGGTATCCGGGTTACAACTGTGTGCCAAAAGGGACGGCGGACACATGGAATAAGCTTTTTCAAGAAGGATACAAAGCTGATGTGCAAATTTTCACTTGTGATGGTCGCGTTATACCGGCTCACAGCAATGTGCTTGGCATTGCTTCTCCAGTGCTGAAGAACCTTTTGAAACAACAAACGGTGAAATCTGTGAAATCTCGCCTCCGTAGCTTCACGATTACAGGGGCTCCGTACGATGCAGTTAGGGCTTTCATATGCTTCCTTTATTCATCAAGGTATGAACAAGAAGATATGAAGAAATATGTCCTCCATCTATTAGTACTGGCACATGTGTTTTCGGTACCATCATTGAAACTAGTGTGCACACAAAATTTGGAGCATGGATTGCTCACAACAGATAATGTTATTGATGTATTACAACTGGCAAGATTATGTGATGCACCACGCTTGAATCTGTTATGCACCCGCCTTATTGTGAAGAACTTCAAAACTGTAGCAAAGTCAGAGGGATGGAAAGTGATGAGACAGTCCAATCCTAAGCTGGAGCAAGAGCTTTTAGAATCTGTCGTTGAGGCTGATTCTAGAAAACAAGAGAGGCTTCGGAAGATAGAGGAGAAGAAGATATACCTACAACTATATGATGCCATGGAAGCACTTGTTCACATATGCAGAGATGGCTGTCGAACAATAGGGCCTCATGACAAGGATTTAGATGAAAATCAAGGGCCTTGCAATTTCCCAGCCTGCAAAGGGCTTGAATCGTTAGTCCGACATTTTGCTGCCTGCAAAACTAGAGTTCCCGGAGGATGTGTACATTGCAAAAGAATGTGGCAACTGCTTGAACTACATTCAAGAATGTGTTCAGAGCCAGACATCTGCAAGGTTCCTCTTTGCAGGCACTTCAAAGAAAAAGTCCAACAACAAACCAAGAAGGATGAGGTGAAATGGAAGGTGTTGGTGAGCAAAGTCATGGTAGCCAAAAAGGCTGTCAATTCATTTTCGGCTTCTGCTGCTGTTAGCGTTCCAGTGTAG___AGAATCTTGCTCTTGGTGCTCGATACATTTCCTTGTATTATAGTTCCATATACTCGTTTCATTTTTTTTCTTCTAAAAATGAATTATGGGTTTTGGCTTGGACAAAAATGATAGGTTACAGTGATTTTACAGTGTTTGAAACTGAGTTGAAGGCTTTAAGATATGCCTATTCTGCTAGAGGGTATAGGTTCCGGTGTCTTTTGTATTGTGTACTGCCTTTGCCTTGTGTTAATAAATTGGATGGCATCCTGAGAGGCTATGTGCAACGAATTTTTTATTTGTGAATATTATACTATTATTCCAGTGAACGATGCCCATGGGGAAGAAATAATGGAAGTCATGCTATTATTCCCTATTTTTTCCATATCCTTTTGCTATGGCCATTATTTCTTG

Fln Alignment:

sp_v1.1_unigene20667___DVQIFTCDGRVIPAHSNVLGIASPVLKNLLKQQTVKSVKSRLRSFTITGAPYDAVRAFICFLYSSRYEQEDMKKYVLHLLVLAHVFSVPSLKLVCTQNLEHGLLTTDNVIDVLQLARLCDAPRLNLLCTRLIVKNFKTVAKSEGWKVMRQSNPKLEQELLES
A9NPG7_______________DVSLQLSDGSKIKAHRAVLISKSPVFKAMLENEMEEN---RTRTIKITDFSYEVLRSFVHYLYTAETFPDEQMAY--DLLVLAEKYQVKHLRTVCEKFIT-SRVNNDNAIMSFAFAHQHNAKHLREAALSLIIENMNTLTTREEYHELVDKDPRLVVEIYES

SNPs (tot: 64)

Position	A %	C %	G %	T %	Probability
122		80		20	0.995493
123	80	20			0.995493
129		20		80	0.995493
134			20	80	0.995493
136			80	20	0.995493
141	20			80	0.995493
289		64		35	1.0
491		75		25	0.996473
718		80	20		0.995493
719			80	20	0.995493
720	20			80	0.995493
874	88	11			0.923564
876	88			11	0.923564
877	88	11			0.923564
882	88	11			0.923564
884	88			11	0.923564
885	88			11	0.923564
886	88		11		0.923564
894		12		87	0.992554
895	12		87		0.992554
897	87			12	0.992554
898	87	12			0.992554
907	75			25	1.0
948			88	11	0.923564
949	11	88			0.923564
951			11	88	0.923564
959	11	88			0.923564
982	85	14			0.993533
984	85	14			0.993533
1099	87	12			0.992554
1101	87			12	0.992554
1102		12		87	0.992554
1103	87		12		0.992554
1107	87	12			0.992554
1108		12	87		0.992554
1109	87			12	0.992554
1110	87			12	0.992554
1111	87		12		0.992554
1112			12	87	0.992554
1113	87	12			0.992554
1121	12	87			0.992554
1217	83		16		0.994512
1283	72		18		0.999994
1284		10		90	0.90298
1285	10			90	0.90298
1290	90			10	0.90298
1294		90	10		0.90298
1295			10	90	0.90298
1296		10		90	0.90298
1299	90	10			0.90298
1300	90		10		0.90298
1475	90		10		0.90298
1480		90	10		0.90298
1481	90		10		0.90298
1586			11	88	0.923564
1587			11	88	0.923564
1588			11	88	0.923564
1636	22		77		0.999999
1807	82		17		1.0
1967	20		80		0.995493
1985		25		75	0.996473
2036		5	95		0.997749
2121	7			76	0.999983
2180	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain