SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20632

Length: 2449 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20632
CGTCGTGACCTTGGCTGTCACTCATTTACAAATATTTTCATAACACTATACATATGGTGGCAAGGATAAGGATGAGCGTTTTGGAACTTGTGTTTGTCAAAGGAGCACAGCTCTAAACCCTAGACCTTCCATCCCGTCGCTACCCAAAGGTGACCGGAGAGAAAGGAGGGCAATCGTGATCTATACAAGACCTCACAGAAAGGAGGTCAATCGTGATCTATACAAGGACTCACAGAAAGGAGCGGAACTCTTCCTTCCTCTTCCCTCATTTCTTCTGCCACTTTCAAGTGCGCGTGCTTGTCTTTTTGTTCGCTGGGAGATAGTGTGCAGTGGTGATGGCGGCTGTGACAGTGGGTGCATCGATCGGCATCGCTGCTGCTGTGACTAATGGCAATGGCAGCGCCCAGGCCGAGAAGCGCAACGGCCCCTGTAATTTGGGGTTTTGTTCACAGTCGTTAAAGGGAGTGCAAATCCCCACTAAGTTAAACTGGGGGTTAAATACCAGGGGCCGCGGCAGAGGGGGAGCCCTGGGTGCTCACATGGTAGCCGCCCCTCTCACCAAAACGCCTTCGCGCATCGATTTCCAAACCGATGTTTTCAAGAAAGAGAAGGTCACGCTTGCTGGGCAAGATGAGTATATTGTGAGAGGAGGGAGAGATCTGTTCGAGCTGCTCCCCAAGGCTTTCAAAGGCATCAAACAGATCGGAGTCATTGGCTGGGGTTCTCAGGGTCCCGCCCAAGCTCAAAATTTGAGGGATTCTTTGGTAGAAGCAAAATCAGACATTGTAGTGAAGATTGGCTTGAGGAAAGGCTCCAAATCCTTCGCTGAGGCACGTGCAGCAGGATTTTCAGAAGAAAATGGAACTCTTGGTGAAATTATAGAGACTGTATCTGGCAGTGACCTTGTATTACTCCTGATATCTGATGCTGCACAGGCAGACAATTACACAAAAATATTTTCCGCCATGAAACCAAACAGCATTCTTGGTCTCTCTCATGGATTTTTACTGGGACATTTGCAGTCTTGTGGGGATGACTTCCCAAAGAACATTAGTGTGATAGCTGTGTGTCCGAAGGGCATGGGGCCATCTGTGAGGCGCTTGTATGTCCAGGGAAAGCAGATTAATGGTGCAGGAATAAACTCTAGTTTTGCTGTTCATCAGGATGTTGATGGGAGAGCAACAGATGTTGCTTTGGGATGGTCAGTAGCTTTGGGTTCACCATTTACATTTGCAACTACTCTGGAGGATGAATACAGGAGTGATATTTTTGGGGAACGTGGGATCTTATTGGGAGCTGTACATGGTATTGTTGAAGCATTGTTCAGACGATATACTGAAGGTGGAATGGATGAAGAACTTGCTTACAAAAATACAGTGGAAGGTGTAACTGGGATCATATCAAAAACTATCTCAACAAAGGGAATGCTATCTATATACAATTCTCTGAACGAAGAAGAAAAGAGGGATTTTGAGATGGCATACAGTGCTTCATATTACCCTTCCATGGAAATTTTGTATGAGTGCTATGAGGATGTAGCTTCCGGCAACGAGATTCGGAGTGTTGTATTGGCAGGGCGTCGGTTTGTTGAGAAGGATGGGCTACCAGCATTTCCCATGGGTAAGATTGACCAAACACGAATGTGGAAAGTTGGCGAACGTGTTCGTGCAGTGCGGCCTGCTGGGGACTTGGGTCCTCTTTATCCATTTACTGCAGGTGTTTATGTGGCATTAATGATGGCACAGATTGAGATCTTGAGGAAGAAGGGCCATTCATACTCGGAGATAATTAATGAGAGTGTGATTGAAGCCGTGGACTCTTTAAATCCTTTCATGCATGCACGGGGTGTTTCTTTCATGGTTGACAACTGCTCAACAACAGCACGGCTTGGGTCAAGAAAATGGGCCCCTCGATTTGATTATATTTTAACTCAACAAGCTTTTGTGGCTATCGATGCGGGCTCACCCCTTAACAGAGATCTCATAAGTAACTTTCTTTCTGACCCTGTGCACAATGCTATAGAACAATGTGCAAAATTACGCCCGACTGTTGACATAGCAGTCACAGCCAATGCGGATTATGTAAGGCCAGAATTACGGCAGTAAAGTGTACTGACCAAAAAGTGTGGAGTGGTTCTGGAATGCTGCATGTCATATTTGGTGGAAAACTGCATGTCACACTTAGTGGAAAGTGCTATACACTCCAATGCAGTGTATGTTAGGGATCGTTTCTGGCCATTATGGTTCTTTAGCAATTAATTTATCAATCTGAGATGGGTCTTTTTAATTGGACCTGCGGACTTTCTTAACAGTAGTTAATGTGCTACATTGTACTAAACTGGTATTGTTATTCTAATTTAACAGACATTGAGTAGATACGATACTCCCTCTGAAGGGTTTTTTAAACTTTTAGGAGTAATAAGAAATATCATATACCAGAGTATTTCTTC

Ace file of the UniGene sp_v1.1_unigene20632

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative ketol-acid reductoisomerase n=1 Tax=Capsicum annuum RepID=B5LAT1_CAPAN	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	ketol-acid reductoisomerase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	89%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	89%
Blast2go	copper ion binding	GO:0005507	Molecular Function	89%
Blast2go	magnesium ion binding	GO:0000287	Molecular Function	89%
Blast2go	NADPH binding	GO:0070402	Molecular Function	89%
Blast2go	protein homodimerization activity	GO:0042803	Molecular Function	89%
Blast2go	catalytic activity	GO:0003824	Molecular Function	89%
Blast2go	cell wall	GO:0005618	Cellular Component	89%
Blast2go	mitochondrion	GO:0005739	Cellular Component	89%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Acetohydroxy acid isomeroreductase C-terminal	IPR000506	-	89%
Blast2go	6-phosphogluconate dehydrogenase, C-terminal-like	IPR008927	-	89%
Blast2go	Acetohydroxy acid isomeroreductase	IPR013023	-	89%
Blast2go	Acetohydroxy acid isomeroreductase, catalytic	IPR013116	-	89%
Blast2go	Dehydrogenase, multihelical	IPR013328	-	89%
Blast2go	NAD(P)-binding domain	IPR016040	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LR30

Fln msg: Overlapping hits, possible frame ERROR between 1652 and 1576,

Fln protein: MAAVTVGASIGIAAAVTNGNGSAQAEKRNGPCNLGFCSQSLKGVQIPTKLNWGLNTRGRGRGGALGAHMVAAPLTKTPSRIDFQTDVFKKEKVTLAGQDEYIVRGGRDLFELLPKAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSKSFAEARAAGFSEENGTLGEIIETVSGSDLVLLLISDAAQADNYTKIFSAMKPNSILGLSHGFLLGHLQSCGDDFPKNISVIAVCPKGMGPSVRRLYVQGKQINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEDEYRSDIFGERGILLGAVHGIVEALFRRYTEGGMDEELAYKNTVEGVTGIISKTISTKGMLSIYNSLNEEEKRDFEMAYSASYYPSMEILYECYEDVASGNEIRSVVLAxxxxxxxxxxxxxxxxxxxxxxxxxxxANVFVQCGLLGTWVLFIHLLQVFMWH*

Protein Length: 468

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTACAAATATTTTCATAACACTATACATATGGTGGCAAGGATAAGGATGAGCGTTTTGGAACTTGTGTTTGTCAAAGGAGCACAGCTCTAAACCCTAGACCTTCCATCCCGTCGCTACCCAAAGGTGACCGGAGAGAAAGGAGGGCAATCGTGATCTATACAAGACCTCACAGAAAGGAGGTCAATCGTGATCTATACAAGGACTCACAGAAAGGAGCGGAACTCTTCCTTCCTCTTCCCTCATTTCTTCTGCCACTTTCAAGTGCGCGTGCTTGTCTTTTTGTTCGCTGGGAGATAGTGTGCAGTGGTG_-_ATGGCGGCTGTGACAGTGGGTGCATCGATCGGCATCGCTGCTGCTGTGACTAATGGCAATGGCAGCGCCCAGGCCGAGAAGCGCAACGGCCCCTGTAATTTGGGGTTTTGTTCACAGTCGTTAAAGGGAGTGCAAATCCCCACTAAGTTAAACTGGGGGTTAAATACCAGGGGCCGCGGCAGAGGGGGAGCCCTGGGTGCTCACATGGTAGCCGCCCCTCTCACCAAAACGCCTTCGCGCATCGATTTCCAAACCGATGTTTTCAAGAAAGAGAAGGTCACGCTTGCTGGGCAAGATGAGTATATTGTGAGAGGAGGGAGAGATCTGTTCGAGCTGCTCCCCAAGGCTTTCAAAGGCATCAAACAGATCGGAGTCATTGGCTGGGGTTCTCAGGGTCCCGCCCAAGCTCAAAATTTGAGGGATTCTTTGGTAGAAGCAAAATCAGACATTGTAGTGAAGATTGGCTTGAGGAAAGGCTCCAAATCCTTCGCTGAGGCACGTGCAGCAGGATTTTCAGAAGAAAATGGAACTCTTGGTGAAATTATAGAGACTGTATCTGGCAGTGACCTTGTATTACTCCTGATATCTGATGCTGCACAGGCAGACAATTACACAAAAATATTTTCCGCCATGAAACCAAACAGCATTCTTGGTCTCTCTCATGGATTTTTACTGGGACATTTGCAGTCTTGTGGGGATGACTTCCCAAAGAACATTAGTGTGATAGCTGTGTGTCCGAAGGGCATGGGGCCATCTGTGAGGCGCTTGTATGTCCAGGGAAAGCAGATTAATGGTGCAGGAATAAACTCTAGTTTTGCTGTTCATCAGGATGTTGATGGGAGAGCAACAGATGTTGCTTTGGGATGGTCAGTAGCTTTGGGTTCACCATTTACATTTGCAACTACTCTGGAGGATGAATACAGGAGTGATATTTTTGGGGAACGTGGGATCTTATTGGGAGCTGTACATGGTATTGTTGAAGCATTGTTCAGACGATATACTGAAGGTGGAATGGATGAAGAACTTGCTTACAAAAATACAGTGGAAGGTGTAACTGGGATCATATCAAAAACTATCTCAACAAAGGGAATGCTATCTATATACAATTCTCTGAACGAAGAAGAAAAGAGGGATTTTGAGATGGCATACAGTGCTTCATATTACCCTTCCATGGAAATTTTGTATGAGTGCTATGAGGATGTAGCTTCCGGCAACGAGATTCGGAGTGTTGTATTGGCAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGCGAACGTGTTCGTGCAGTGCGGCCTGCTGGGGACTTGGGTCCTCTTTATCCATTTACTGCAGGTGTTTATGTGGCATTAA___TGATGGCACAGATTGAGATCTTGAGGAAGAAGGGCCATTCATACTCGGAGATAATTAATGAGAGTGTGATTGAAGCCGTGGACTCTTTAAATCCTTTCATGCATGCACGGGGTGTTTCTTTCATGGTTGACAACTGCTCAACAACAGCACGGCTTGGGTCAAGAAAATGGGCCCCTCGATTTGATTATATTTTAACTCAACAAGCTTTTGTGGCTATCGATGCGGGCTCACCCCTTAACAGAGATCTCATAAGTAACTTTCTTTCTGACCCTGTGCACAATGCTATAGAACAATGTGCAAAATTACGCCCGACTGTTGACATAGCAGTCACAGCCAATGCGGATTATGTAAGGCCAGAATTACGGCAGTAAAGTGTACTGACCAAAAAGTGTGGAGTGGTTCTGGAATGCTGCATGTCATATTTGGTGGAAAACTGCATGTCACACTTAGTGGAAAGTGCTATACACTCCAATGCAGTGTATGTTAGGGATCGTTTCTGGCCATTATGGTTCTTTAGCAATTAATTTATCAATCTGAGATGGGTCTTTTTAATTGGACCTGCGGACTTTCTTAACAGTAGTTAATGTGCTACATTGTACTAAACTGGTATTGTTATTCTAATTTAACAGACATTGAGTAGATACGATACTCCCTCTGAAGGGTTTTTTAAACTTTTAGGAGTAATAAGAAATATCATATACCAGAGTATTTCTTC

Fln Alignment:

sp_v1.1_unigene20632___MAAVTVGASIGIAAAVTNGNGS--AQAEKRNGPCNLGFCSQSLKGVQIPTKLNWGLNTXXXXXXXALGAHMVAAPLTKTPSRIDFQTDVFKKEKVTLAGQDEYIVRGGRDLFELLPKAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSKSFAEARAAGFSEENGTLGEIIETVSGSDLVLLLISDAAQADNYTKIFSAMKPNSIXXXXXXXXXXXXQSCGDDFPKNISVIAVCPKGMGPSVRRLYVQGKQINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEDEYRSDIFGERGILLGAVHGIVEALFRRYTEGGMDEELAYKNTVEGVTGIISKTISTKGMLSIYNSLNEEEKRDFEMAYSASYYPSMEILYECYEDVASGNEIRSVVLAxxxxxxxxxxxxxxxxxxxxxxxxxxANVFVQCGLLGTWVLFIHLLQVFMWH
B8LR30_______________MAAVTGCASISITAAVANGNGSGSAKGEKRNVPCNLGFCSQSLKGMQIPTKLNWGLNTRGRGRGGALGAHMVASPLTKTPSRIDFQTDVFKKEKTTLAGQDEYIVRGGRDLFELLPKAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSKSFAEARAAGFSEENGTLGEMIETVSGSDLVLLLISDAAQADNYTKIFSAMKPNSILGLSHGFLLGHLQSCGDDFPENISVIAVCPKGMGPSVRRLYVQGKQINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEDEYRSDIFGERGILLGAVHGIVEALFRRYTEGGMDEELAYKNTVEGITGIISKTISTKGMLSIYNSLNEEEKGDFEMAYSASYYPCMEILYECYEDVASGNEIRSVVLAxxxxxxxxxxxxxxxxxxxxxxxxxxVNGFVQCGLLVTWVLFIHLLPVFMWH

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
451	88			11	0.923564
619			4	93	0.973796
624			93	6	0.999998
629	93			6	0.999998
633		6	93		0.999998
635		6	93		0.999998
1018		11		88	0.999937
1025			11	88	0.999937
1026	11			88	0.999937
1031	11		88		0.999937
1032		11	88		0.999937
1034			11	88	0.999937
1036	88	11			0.999937
1497		10		90	0.90298
1905	9		90		0.999872
2224	97		2		0.966038
2372		4		95	0.997494
2448		45		54	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain