SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20629

Length: 1259 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20629

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	eukaryotic translation initiation factor 4e, putative; K03259 translation initiation factor eIF-4E	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	82%

Source	InterPros	Term	Type	Identity
Blast2go	Translation Initiation factor eIF- 4e	IPR001040	-	82%
Blast2go	Eukaryotic translation initiation factor 4E (eIF-4E), conserved site	IPR019770	-	82%
Blast2go	Translation Initiation factor eIF- 4e-like domain	IPR023398	-	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNZ6

Fln msg:

Fln protein: MAQEEPQNGETTLIERPIDGGKKHVLENSWTFWFDNPSGKSKSAAWGSSLRSVYTFRTVEDFWCLYNNVFLPSKLPAGADFHCFKAGIEPKWEDLTCAHGGKWTATNTRGGKAGLDQLWLNTLLAMIGEQFDEGDEICGAVASMRARQEKIALWTRTATNEAAQMSIGKQWKEFLDYNEKIHYMFHEDAKKDKSARNRYTI*

Protein Length: 203

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCGAGGGATACAAATAGGGCCTATCCCTGGGCAAATGGTACTTTGTGTTAGTAATTCTAACACTACTAGGGCTTTATTTCAAGGGTGCGACAAGA_-_ATGGCGCAGGAAGAACCCCAGAACGGTGAAACTACTCTGATAGAGAGGCCTATTGATGGCGGGAAGAAGCATGTATTGGAGAACTCATGGACTTTCTGGTTCGACAACCCTTCCGGGAAATCGAAGTCGGCAGCATGGGGCAGCTCACTTCGTTCCGTCTATACCTTCAGGACGGTTGAAGATTTCTGGTGTTTATACAACAACGTGTTTCTGCCAAGCAAGCTGCCCGCAGGGGCAGATTTCCACTGCTTTAAAGCGGGTATAGAGCCCAAGTGGGAAGACCTTACATGTGCTCACGGAGGAAAGTGGACTGCCACTAACACCCGAGGCGGCAAGGCTGGATTGGATCAACTATGGCTTAACACTCTGTTGGCCATGATCGGTGAACAATTTGACGAAGGCGATGAAATTTGTGGTGCTGTGGCTAGTATGAGAGCTAGACAAGAAAAAATTGCCTTGTGGACCAGAACTGCCACCAATGAAGCTGCCCAGATGTCAATTGGTAAGCAGTGGAAAGAGTTCCTCGACTATAACGAAAAGATCCATTACATGTTCCATGAAGATGCAAAGAAGGATAAATCTGCAAGAAATAGATATACAATATAA___AGTTAAATTTTGAAGTATCTATTTTGCCTTTGCACCTGTGAGAAACCATATATGCACTGGGAAATGGTTCGGCACTGACTGGAGTGTGTTGATACATTCTTATAAGAAAGATAAAGGCAGCTATAGTGTGTTAGTTATTGTCAACTGTCCATGATCCAACGTTGTCTGCGAAAAGTGTATTTTTATGGAAGACACGTTTATTTAGTATCTGTTTTCCCTTTTTAATATTACAATCATAGTACGTGTTGTAATTTGTCACGTCACCTCATTTAATATTTTGAATGTTGTGTACCAACCGTGAGGACACGAGGATACTGTTATAAGAGTTAAGTTGCATTTGGAAAATATTAATACGGTGGGGACTGTGGTAGCTGTAGCAAAAGTACATTTTCTTTTGTGCAGCGAGAGAAGTTAATGAGTTTTATTGCTAGGGACAGGAATAAATTCCACATAATTTTATCTAGCTCTTAACCTGGATGCATCTTTGCCAATGTGTACATCGTTGTGCAGGAATACAAATTTTTCCATTTTCT

Fln Alignment:

sp_v1.1_unigene20629___MAQEEPQNGETTLIERPIDGGKKHVLENSWTFWFDNPXXXXXXXXXXXXLRSVYTFRTVEDFWCLYNNVFLPSKLPAGADFHCFKAGIEPKWEDLTCAHGGKWTATNTRGGKAGLDQLWLNTLLAMIGEQFDEGDEICGAVASMRARQEKIALWTRTATNEAAQMSIGKQWKEFLDYNEKIHYMFHEDAKKDKSARNRYTI
A9NNZ6_______________MAQEEPQNGEVKLIERPIDGGKKHPLENAWTFWFDNPSGKSKSAAWGSSLRSVYTFKTVEDFWCLYNNVFLPSKLPSGADFHCFKSGIEPKWEDLICAHGGKWTATNTRGGKAGLDQLWLNTLLAMIGEQFDEGDEICGAVASVRARQEKIALWTRTATNEAAQMSIGKQWKEFIDYNEKIQYMFHEDAKKDKAARNRYTL

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
52		75	25		0.996473
54		25	75		0.996473
56			75	25	0.996473
57		75	25		0.996473
59	75	25			0.996473
60	75	25			0.996473
62			75	25	0.996473
65	75		25		0.996473
68			25	75	0.996473
70		25	75		0.996473
71	25			75	0.996473
72		25	75		0.996473
74		25		75	0.996473
449	16		83		0.994512
563	85	14			1.0
626	96		3		0.987242
937		12	87		0.992554
938			14	85	0.993533
939		16		83	0.994512
940	20			80	0.995493
941			20	80	0.995493
942		80		20	0.995493
943		80	20		0.995493
944	20	80			0.995493
945		60	20	20	0.99255
947			20	80	0.995493
948	20			80	0.995493
949		20		60	0.99255
951	83		16		0.994512
952			14	85	0.993533
953	85	14			0.993533
954		14		85	0.993533
1191		44		55	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain