SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20609

Length: 1116 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene20609 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Replication factor A 1, rfa1, putative n=1 Tax=Ricinus communis RepID=B9S1L9_RICCO	-	-	38%
FL-Next	tr=Putative glycine-rich protein; Picea glauca (White spruce) (Pinus glauca).	-	-	53%
Blast2go	replication factor a	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	male meiosis I	GO:0007141	Biological Process	78%
Blast2go	chiasma assembly	GO:0051026	Biological Process	78%
Blast2go	male gamete generation	GO:0048232	Biological Process	78%
Blast2go	pollen development	GO:0009555	Biological Process	78%
Blast2go	reciprocal meiotic recombination	GO:0007131	Biological Process	78%
Blast2go	nuclear chromatin	GO:0000790	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, CCHC-type	IPR001878	-	78%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	78%
Blast2go	Zinc finger, CCHC retroviral-type	IPR013084	-	78%
Blast2go	Replication factor A, C-terminal	IPR013955	-	78%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	78%

Full-Lengther Next Prediction

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
153		50		50	1.0
189	12			87	0.992554
382	83		16		0.994512
383	16	83			0.994512
385	16			83	0.994512
387		16		83	0.994512
388	83	16			0.994512
389	16			83	0.994512
390	16			83	0.994512
391			16	83	0.994512
395	20	80			0.995493
400	80	20			0.995493
401			20	80	0.995493
884	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain