SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20608

Length: 2218 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20608
CGTCGTGACCTTGGCTGTCACTCATATCCCACTCATGCCTTGATTACAACTGCCGGCTGGATTGCACGAGAATACTGTTGGGCTGCTGCCACAAAGCCGCTTAGATTGAACGGGGCTCCGCGTTTGTTGGCTCCAAAGCTTTTTTCAAACCCAATAGCTGTGTTCATACAAATAAAGATATCATATCTTTTTAATATAAATATGCGTTTATTCATTGCGCATGCTTTTATTTTATTAGTTTGTGTGTGTCATTCGCGATTGTGGATGCCCATCATGGTCAAAGCCGCCTTGTTTACGTAACCAGACAGACCATATAGAGTCAAGAAGAAGCCAAAGTAGGGGGTACACGCCAGGGGCTTCTTGATTGATCGGTGTTTAGAGCGAATTATGAGCAGCGGGACGATTGTTATCTGCTGTTTCTGGTGATTTTCTTGTGATCTGACGCCGGCCGGCCATGGCTTCCAGCGATGATTATGGATTCAACGAGGCTAAGATGGTGGTTCCGTTGAATACGTTCGTTCTCATCTCGAATTTCAAGCTCGTCTACAACCTTCTCCGTCGTCCCGACGGAACATTCAACCGTCACTTAGCAGAATTCCTGGACCGCAAGGCCCCCGCGAACGCGACTCCTGTCAGCGGTGTATTCTCCCTCGATGTCGTCATGGACAGGGATTCAGGCCTGTGGAGCCGGATTTACACTCCCGTCGGTTCCACGTCGGACTCGGCCGCCAACGCGGCGGGGCTCCCCGTCATCATCTTTTTCCACGGCGGCAGTTTCGCGCACTCGTCCGCTAACAGCGCTATTTACGACGTCCTCTGCCGGCACTTCTCGAGCTTCTGCAGCGCTATCGTGGTCTCCGTCAATTACCGCCGGGCACCTGAGCATATCTACCCGGCGCCCTACGAGGATGGCTGGACAGCCCTACGTTGGGTCACGTCGCCCGCCGCACGGCCGTGGCTGCGCCACGAGGTGGACACCGAGCGCCAGCTGTTCCTAGCTGGCGACAGCTCAGGCGGCAACATTGTGCACCACGTCGCCCGGCGCGCCGGGGAAACCGGCATCCACGTCGCCGGCAACATCCTGCTGAACCCTATGTTCGGAGGCGAGCAGCGGACGGAGTCCGAGCGCAGGCTCGACGGCAAATATTTCGTCACTATACGGGACCGGGATTGGTACTGGAATGCCTTCTTGCCCGCGGGAGCCAATAGGGATCATCCAGCCTGTAATCCCTTCGGCCCTCACGGCCCGAGATTGGACGGAATCCGGTTCCCCAAGAGCCTGGTGGTCGTGGCGGGGCTCGATCTGTTACAAGATTGGCAGCGAAACTACGCAGAAGAACTCCGGCGAGCGGGCAAAGAGGTAAAACTCATGTTCTTGGAACAGACAACCATAGGTTTCTATCTTCTGCCCAACACAGATCTCTTTTTCAACGTCATGGGCGAGATCAAGAGATTCGTTAACGGAAACGGAAACGGAAACGGAAACACCGAAGAAGAAGGAAACGGTGCCGAGAATTCTGTTAATTAACAGACCATGAAATGCAGATCTCGGAGGTTTCCTTTCCTTTCCTTTCCATTTCTCCTCATAATCTCTTTCTTCATTTTGTATTTGTAAGTATTGGCTTTTTTTAGTTAACACCGCTTGTATTGACGGCGAAGACTTTTGCTAAGGTTCCGGCAGCTAACGGAAACGGGCGTCAGTCGCGTCCGGTTCCGGAACTTTAGCCAAATGCTTCATCGAAAAGGTGTGAGCAGTTATACGTGGTGACATTTATGGGTTTTTGGATTCCGCCAAATTAATGCCCTGCTTGGTGTGTCATCCAAAGAAGGAAAAAAGGGGTAAATATTTGGTTGTTGTGGGGTGGGTCAGTAACTTTGTCAGTCACTTTACGCTATTTTACTAATTTTACAGTGCTAATTCATGATGATGATGTGGACATTTCATCTTGTACTTCATCATGCTGATGTGGACATTTCATCTTGTTTTTACTTTGTAAGACAACTCGGCTTTATTAAGACATTCTCTTTTTGGTGTTTATGCAAATTGGGTTTTGTTTTGTTTCAATAATTATCAGCACCCTGCGCCCCTAATAGGATTAGCAGGGGACAAGAGAAAACCCACTTGTAAATTTCACAGCATCATATTTTTCCAATCTATACTATTTTCAGATACGAAAACAGCTGCCCTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Ace file of the UniGene sp_v1.1_unigene20608

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative GID1-like gibberellin receptor n=3 Tax=Pinaceae RepID=B0S4S2_PINTA	-	-	98%
FL-Next	tr=Putative GID1-like gibberellin receptor; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	tpa: gid1-like gibberellin receptor	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of gibberellic acid mediated signaling pathway	GO:0009939	Biological Process	80%
Blast2go	floral organ morphogenesis	GO:0048444	Biological Process	80%
Blast2go	raffinose family oligosaccharide biosynthetic process	GO:0010325	Biological Process	80%
Blast2go	protein binding	GO:0005515	Molecular Function	80%
Blast2go	cytoplasm	GO:0005737	Cellular Component	80%
Blast2go	nucleus	GO:0005634	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, GDXG, active site	IPR002168	-	0.0	80%
Blast2go	Alpha/beta hydrolase fold-3	IPR013094	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B0S4S2

Fln msg:

Fln protein: MASSDDYGFNEAKMVVPLNTFVLISNFKLVYNLLRRPDGTFNRHLAEFLDRKAPANATPVSGVFSLDVVMDRDSGLWSRIYTPVGSTSDSAANAAGLPVIIFFHGGSFAHSSANSAIYDVLCRHFSSFCSAIVVSVNYRRAPEHIYPAPYEDGWTALRWVTSPAARPWLRHEVDTERQLFLAGDSSGGNIVHHVARRAGETGIHVAGNILLNPMFGGEQRTESERRLDGKYFVTIRDRDWYWNAFLPAGANRDHPACNPFGPHGPRLDGIRFPKSLVVVAGLDLLQDWQRNYAEELRRAGKEVKLMFLEQTTIGFYLLPNTDLFFNVMGEIKRFVNGNGNGNGNTEEEGNGAENSVN*

Protein Length: 359

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATCCCACTCATGCCTTGATTACAACTGCCGGCTGGATTGCACGAGAATACTGTTGGGCTGCTGCCACAAAGCCGCTTAGATTGAACGGGGCTCCGCGTTTGTTGGCTCCAAAGCTTTTTTCAAACCCAATAGCTGTGTTCATACAAATAAAGATATCATATCTTTTTAATATAAATATGCGTTTATTCATTGCGCATGCTTTTATTTTATTAGTTTGTGTGTGTCATTCGCGATTGTGGATGCCCATCATGGTCAAAGCCGCCTTGTTTACGTAACCAGACAGACCATATAGAGTCAAGAAGAAGCCAAAGTAGGGGGTACACGCCAGGGGCTTCTTGATTGATCGGTGTTTAGAGCGAATTATGAGCAGCGGGACGATTGTTATCTGCTGTTTCTGGTGATTTTCTTGTGATCTGACGCCGGCCGGCC_-_ATGGCTTCCAGCGATGATTATGGATTCAACGAGGCTAAGATGGTGGTTCCGTTGAATACGTTCGTTCTCATCTCGAATTTCAAGCTCGTCTACAACCTTCTCCGTCGTCCCGACGGAACATTCAACCGTCACTTAGCAGAATTCCTGGACCGCAAGGCCCCCGCGAACGCGACTCCTGTCAGCGGTGTATTCTCCCTCGATGTCGTCATGGACAGGGATTCAGGCCTGTGGAGCCGGATTTACACTCCCGTCGGTTCCACGTCGGACTCGGCCGCCAACGCGGCGGGGCTCCCCGTCATCATCTTTTTCCACGGCGGCAGTTTCGCGCACTCGTCCGCTAACAGCGCTATTTACGACGTCCTCTGCCGGCACTTCTCGAGCTTCTGCAGCGCTATCGTGGTCTCCGTCAATTACCGCCGGGCACCTGAGCATATCTACCCGGCGCCCTACGAGGATGGCTGGACAGCCCTACGTTGGGTCACGTCGCCCGCCGCACGGCCGTGGCTGCGCCACGAGGTGGACACCGAGCGCCAGCTGTTCCTAGCTGGCGACAGCTCAGGCGGCAACATTGTGCACCACGTCGCCCGGCGCGCCGGGGAAACCGGCATCCACGTCGCCGGCAACATCCTGCTGAACCCTATGTTCGGAGGCGAGCAGCGGACGGAGTCCGAGCGCAGGCTCGACGGCAAATATTTCGTCACTATACGGGACCGGGATTGGTACTGGAATGCCTTCTTGCCCGCGGGAGCCAATAGGGATCATCCAGCCTGTAATCCCTTCGGCCCTCACGGCCCGAGATTGGACGGAATCCGGTTCCCCAAGAGCCTGGTGGTCGTGGCGGGGCTCGATCTGTTACAAGATTGGCAGCGAAACTACGCAGAAGAACTCCGGCGAGCGGGCAAAGAGGTAAAACTCATGTTCTTGGAACAGACAACCATAGGTTTCTATCTTCTGCCCAACACAGATCTCTTTTTCAACGTCATGGGCGAGATCAAGAGATTCGTTAACGGAAACGGAAACGGAAACGGAAACACCGAAGAAGAAGGAAACGGTGCCGAGAATTCTGTTAATTAA___CAGACCATGAAATGCAGATCTCGGAGGTTTCCTTTCCTTTCCTTTCCATTTCTCCTCATAATCTCTTTCTTCATTTTGTATTTGTAAGTATTGGCTTTTTTTAGTTAACACCGCTTGTATTGACGGCGAAGACTTTTGCTAAGGTTCCGGCAGCTAACGGAAACGGGCGTCAGTCGCGTCCGGTTCCGGAACTTTAGCCAAATGCTTCATCGAAAAGGTGTGAGCAGTTATACGTGGTGACATTTATGGGTTTTTGGATTCCGCCAAATTAATGCCCTGCTTGGTGTGTCATCCAAAGAAGGAAAAAAGGGGTAAATATTTGGTTGTTGTGGGGTGGGTCAGTAACTTTGTCAGTCACTTTACGCTATTTTACTAATTTTACAGTGCTAATTCATGATGATGATGTGGACATTTCATCTTGTACTTCATCATGCTGATGTGGACATTTCATCTTGTTTTTACTTTGTAAGACAACTCGGCTTTATTAAGACATTCTCTTTTTGGTGTTTATGCAAATTGGGTTTTGTTTTGTTTCAATAATTATCAGCACCCTGCGCCCCTAATAGGATTAGCAGGGGACAAGAGAAAACCCACTTGTAAATTTCACAGCATCATATTTTTCCAATCTATACTATTTTCAGATACGAAAACAGCTGCCCTTCGCAGTGAGTGACAGGCCACTGAGACTGC

Fln Alignment:

sp_v1.1_unigene20608___MASSDDYGFNEAKMVVPLNTFVLISNFKLVYNLLRRPDGTFNRHLAEFLDRKAPANATPVSGVFSLDVVMDRDSGLWSRIYTPVGSTSDSAANAAGLPVIIFFHGGSFAHSSANSAIYDVLCRHFSSFCSAIVVSVNYRRAPEHIYPAPYEDGWTALRWVTSPAARPWLRHEVDTERQLFLAGDSSGGNIVHHVARRAGETGIHVAGNILLNPMFGGEQRTESERRLDGKYFVTIRDRDWYWNAFLPAGANRDHPACNPFGPHGPRLDGIRFPKSLVVVAGLDLLQDWQRNYAEELRRAGKEVKLMFLEQTTIGFYLLPNTDLFFNVMGEIKRFV
B0S4S2_______________MASSDDYGFNEAKMVVPLNTFVLISNFKLVYNLLRRPDGTFNRHLAEFLDRKAPANATAVSGVFSLDVVMDRDSGLWSRIYTPVGATSDSAANAAGLPVIIFFHGGSFAHSSANSAIYDVLCRHFSSFCSAIVVSVNYRRAPEHIYPAPYEDGWTALRWVTSPAARPWLRHEVDTERQLFLAGDSSGGNIVHHVARRAGETGIHVAGNILLNPMFGGEQRTESERRLDGKYFVTIRDRDWYWNAFLPAGANRDHPACNPFGPHGPRLEEIRFPQSLVVVAGLDLLQDWQRNYAEELRRAGKEVKLMFLEQTTIGFYLLPNTDLFFNVMGEIKRFV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
13	25		75		0.996473
546		85		14	0.999981
1411		80	20		0.995493
1468	75			25	0.996473
1572		85		14	0.993533
1992	10	90			0.90298

SSRs (tot: 3)

Start position	End position	Sequence	Length
1460	1486	AACGGA AACGGA AACGGA AACGGA AAC	27
1556	1575	TTTCC TTTCC TTTCC TTTCC	20
1922	1933	ATG ATG ATG ATG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain