SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20556

Length: 1242 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene20556 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to polyubiquitin; K08770 ubiquitin C	-	-	100%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	100%
Blast2go	polyubiquitin	-	-	99%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-B	GO:0010224	Biological Process	99%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	99%
Blast2go	aging	GO:0007568	Biological Process	99%
Blast2go	protein modification process	GO:0006464	Biological Process	99%
Blast2go	protein binding	GO:0005515	Molecular Function	99%
Blast2go	nucleolus	GO:0005730	Cellular Component	99%
Blast2go	vacuole	GO:0005773	Cellular Component	99%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	99%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin	IPR000626	-	99%
Blast2go	Ubiquitin conserved site	IPR019954	-	99%
Blast2go	Ubiquitin supergroup	IPR019955	-	99%
Blast2go	Ubiquitin subgroup	IPR019956	-	99%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg:

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF*

Protein Length: 231

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGAGAGCTTTCTCTTGCGTTCGCGTTCTGTTATCATTTTCATACGTCGAATAATTTGTCTTCTACAGGTCTTCCTCAGTAGTTTTATTCCGGCTTCAAG_-_ATGCAGATCTTTGTTAAAACCCTTACCGGCAAGACCATTACTCTCGAGGTTGAGAGCTCTGACACCATTGACAATGTAAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAGCAGCGTCTGATATTTGCCGGAAAACAACTGGAAGACGGCCGTACCCTTGCCGATTACAACATCCAGAAGGAATCCACGCTGCATCTTGTCCTCCGTCTGAGGGGTGGTATGCAGATTTTTGTTAAAACTCTTACTGGCAAGACTATTACTTTGGAAGTTGAGAGCTCAGACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATCCCCCCTGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTCGAAGACGGCAGAACCCTGGCTGACTACAATATTCAAAAGGAGTCTACCCTGCATCTGGTGCTCCGTCTAAGAGGAGGCATGCAGATTTTTGTTAAAACCCTTACAGGCAAAACAATTACTCTGGAAGTGGAGAGCTCGGATACCATTGACAATGTAAAAGCTAAGATCCAGGACAAGGAGGGAATCCCACCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTAGAAGATGGTCGTACTCTGGCCGATTACAACATTCAGAAGGAGTCGACCCTTCACCTGGTGCTCCGTCTCCGTGGTGGCTTTTAG___GTTGGCTGTTGTGTGTCAATGTAGTCTGGTGATGTTCAGTGGTTTTCCTGCTTAATGCTTTTTATGTATGTGTATGTGTTTGTTGTGTTTGTGTTTTGCCGCTGTTTTTGTTTTGTCTCTATGTTATTTCTACTTGGTTTGTCGGTCGGTTGAAGCCCGGCTGGTGTCCTGGTAGGCAGTGCAATACTGTGTTCGTTTAATATAAAAACTCTTATCTTTTATGTGAATCGATTTCCATTTCTATGGTTTGAAGTAAATGTGGATGAAATTCTGAGATACAAATTATAAACTCTGTTATCTGTTATGTGAATCGATCTGCATTTCTATTATCGATTGAAGTAAATGTGGATGAAATTCTGAGATACAAATTATCATTTGCTCTATTTTGTCGGAAACAACGTATTCCGATAATGTTTGGTGAAATTGAGTT

Fln Alignment:

sp_v1.1_unigene20556___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF
Q7FPA4_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
110	80			20	0.995493
207		20		80	0.995493
236	66		33		0.997452
299	66			33	0.997452
304	66			33	0.997452
305	66		33		0.997452
307		33		66	0.997452
309	66		33		0.997452
311	66	33			0.997452
312	33			66	0.997452
313	66			33	0.997452
317	33			66	1.0
318		66	33		0.997452
320	33	66			1.0
321	66		33		0.997452
322	66		33		0.997452
324	33	33	33		0.997753
889	50		50		1.0
898	25		75		0.996473
1142	97		2		0.956062
1220	0	2		96	0.992593
1224		81	0	17	1.0
1225	0	81	17		1.0
1226	17	81			1.0
1227	80	0	18		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain