SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20530

Length: 1888 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20530

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF642 domain containing protein	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	66%
Blast2go	uncharacterized protein	-	-	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF642	IPR006946	-	0.0	82%
Blast2go	Galactose-binding domain-like	IPR008979	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: O24329

Fln msg:

Fln protein: MWCSRVSICRFLCLLQLLFQLWGSVTASDGLLPNGDFELAPKPKNLKGTVLVGRNSLPKWRTSGFVEYITSGHRQRDMLVVVPEGAHAVRLGNEASISQSIKVTRGSYYSLTFSAARTCAQFERLNVSVPPFSGDISIQTLYSSNGWDAYSWAFRALSSVVDVILHNPGVTEDPACGPVLDAVAIKELFPPRFTRFDLIKNGDFEEGPYMFPSSNSGVLLPPNVEDAISPLPGWIIESLKAVKYLDGAHFAVPQGRRAVELVAGKESAISQVVRTIPGRLYRLSFAVGDARNTCMGNMIVEAFAGRETVKVPFESKGAGTFKAATLAFTAIAPRTRVTFFSTFYTMRSDDFSTLCGPVIDQVKLFSVR*

Protein Length: 370

Fln nts: ATGGGGGTAAATTTCAAGGAAGATCGATCACTGATTCACTGCTATTTCGAATTAAAATGAATAAGAACGTTAGCCGATACACATTCAAATGTGGGACAGGTCATCCCTAGCAGCCACGTGCTGGACACATCCATCCATGGCGATGGAGACCAAGTGTGCCCACAGACTTCGACTCCCTGTCTTATTCTGAATCTTGATCTATAAATAAACCCGATAAGAAGATCGGGCACTGCAAATGCTGTGAGTGCTCAGATAGTTTGCCCCTTGTAGCCAGACTCTCTAGTTAGACTCGAAA_-_ATGTGGTGCTCCAGGGTTTCGATCTGCCGTTTCTTATGTCTGCTGCAGTTGCTTTTTCAGCTATGGGGATCTGTCACCGCCAGTGATGGTCTGCTGCCGAATGGGGACTTTGAGTTGGCTCCTAAGCCCAAGAACCTGAAAGGCACGGTCCTTGTGGGGCGGAACTCCTTACCGAAGTGGCGAACCAGTGGTTTTGTGGAGTACATAACATCTGGACATCGTCAGCGTGATATGTTGGTGGTCGTCCCCGAAGGAGCCCACGCTGTGAGACTGGGAAACGAGGCGTCCATCAGCCAGAGTATCAAGGTCACAAGGGGCTCCTATTACTCGCTTACATTTAGTGCGGCGAGGACTTGTGCACAGTTTGAGAGATTGAATGTCTCTGTTCCTCCGTTTTCTGGAGACATATCCATACAAACCCTGTACAGCAGCAATGGCTGGGATGCTTATTCCTGGGCATTCAGGGCTCTTTCCAGTGTAGTCGATGTTATTCTTCACAACCCCGGCGTTACAGAAGATCCGGCTTGCGGACCAGTGCTGGATGCAGTGGCAATCAAGGAGTTGTTTCCCCCTCGGTTCACAAGATTCGATCTCATAAAGAATGGCGATTTTGAGGAGGGCCCTTACATGTTCCCAAGCTCCAACTCCGGCGTGCTTCTTCCTCCCAACGTTGAAGATGCCATTTCTCCTCTGCCGGGATGGATCATCGAATCTCTGAAAGCTGTCAAGTACCTTGACGGGGCACATTTTGCAGTTCCGCAGGGCAGGAGAGCCGTGGAGCTCGTGGCCGGCAAGGAAAGCGCCATATCCCAGGTCGTCAGAACGATTCCCGGCAGATTGTACCGCTTGAGCTTTGCAGTGGGAGATGCCAGGAATACCTGCATGGGTAACATGATTGTGGAGGCATTTGCTGGGAGGGAAACAGTCAAGGTTCCCTTCGAATCAAAGGGAGCCGGAACCTTTAAGGCTGCAACACTCGCTTTCACTGCGATCGCCCCCAGGACTCGCGTTACTTTCTTCAGTACGTTTTACACCATGAGAAGCGACGACTTCAGTACGCTGTGCGGTCCTGTGATAGATCAAGTTAAACTCTTTTCCGTTCGTTAA___GCGCTCTGTTGCTATCTGCAGATTTTGTTTTATTGCTGTCTACTGCATTTATGTATGCATTTGATTAGTGCTTCTGATCTGATCTGATTTGATACCTCCCTTAACAGAGGAGAGATTGATACCACAAGTATTTGAAGTTTCTATGGCTTTTTGGTTCCATCCACTCGCTGGACTATTTATTTAAGCTTATGAAATTATTGTTTGGGATCAGTTTGGCTGGATAGTAGCCTTAGCCTTCGTGATGGCAATGAACCAGCATTTTGTTCACGAGCAGTGAGAGATGATAATAATATTTGTCTTACAGATTGCTTGTGCTGTTTTCTGGATCGTACTCTGTTCTGCATTTCTACTGTTCCACCGCTTTTCAGTGGGTAGATGTAGTAATTCATCGCGTAAAGCCGTATCCCTTCTGGCACGGCTGAGGCATCCTTTAATTAATTTTTGGATTTCTGGTATCCTTTTCCGCCTTCGCAGTGAGTGACAGGC

Fln Alignment:

sp_v1.1_unigene20530___SVTASDGLLPNGDFELAPKPKNLKGTVLVGRNSLPKWRTSGFVEYITSGHRQRDMLVVVPEGAHAVRLGNEASISQSIKVTRGSYYSLTFSAARTCAQFERLNVSVPPFSGDISIQTLYSSNGWDAYSWAFRALSSVVDVILHNPGVTEDPACGPVLDAVAIKELFPPRFTRFDLIKNGDFEEGPYMFPSSNSGVLLPPNVEDAISPLPGWIIESLKAVKYLDGAHFAVPQGRRAVELVAGKESAISQVVRTIPGRLYRLSFAVGDARNTCMGNMIVEAFAGRETVKVPFESKGAGTFKAATLAFTAIAPRTRVTFFSTFYTMRSDDFSTLCGPVIDQVKLFSVR
O24329_______________SLSIRDGLVKNGNFELAPKPSDMKGTQVIGKNAIPEWEISGFVEYIKSGQKQGDMLLVVPEGAYAVRLGNEASIKQRMRVIKGMYYSITFSAARTCAQEEKLNVSVSPDWGVLPMQTMYSSNGWDSYAWAFQAEFQYVDLVIHNPGVEEDPACGPLIDSVAIRALYPPRPTNKNILKNGGFEEGPYVFPNTSWGVLIPPNIEDDHSPLPGWMVESLKAVKYIDVDHFSVPQGRRAIELVAGKESAIAQVARTVIGKTYTLSFAVGDASNSCEGSMVVEAFAGKDTLKVPYESKGKGGFKRAVLRFVAVANRTRIMFYSTFYTMRSDDFSSLCGPVLDDVKLLSVR

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
223	75		25		0.996473
224			25	75	0.996473
226			75	25	0.996473
229			75	25	0.996473
380	85	14			0.993533
949	80	20			0.995493
1099		87		12	0.992554
1124	88		11		0.923564
1309			9	90	0.999872
1314			9	90	0.999872
1320		9	90		0.999872
1347	95			4	0.99692
1349			4	95	0.99692
1351		90	9		1.0
1352	95	4			0.99692
1353		4	95		0.99692
1354		4		95	0.99692
1355	95			4	0.99692
1356		93		4	0.985381
1460	95		4		0.996599
1560			2	93	0.976545
1606		6		93	0.999999
1711		9		90	0.999842
1865	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1475	1490	TCTGA TCTGA TCTGA T	16

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain