SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20490

Length: 3414 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20490
CGTCGTGACCTTAGCTGTCACTCAATATTTATGAAGAATAATTTGTGTATGTTCATGTTTTTTGTCTTAATAGTTGTATTGTGTATGTACAATTATTTTAATCATTCTTAAGTTTGTGTTTCATCTCTAGCTGACCTAATTTCTTGTGGTGCATTTATAAGTGCCACTGAAAATTTTCTTCTCAGAATAACCAATTGATGATATGCAGTTACTCATTTGTTTTTGAGTTGTGCATAACTGGTTAACTCTTGTGTAGATGCGCAACTCAAAAGAAGTGACTGTGGAGGAATACAATGAATTTTACAAGAAAACTTTCAATGAATATATGGATCCTCTTGCATGCTCTCACTTCACTACAGAGGGTGAAGTTGAGTTCAGAAGTATTCTGTATGTACCTACTATTACTCCCATGGGCAGGGAAGACATTGTAAATCCCAAGACAAAGAATATCCGTCTATATGTGAAACGTGTGTTTATTTCAGATGATTTTGATGGGGAATTGTTTCCACGCTATTTAAGCTTTGTCAAAGGTGTTGTGGATTCAAATGACTTGCCTCTTAATGTTTCTAGGGAGATCCTTCAGGAAAGCCGCATTGTCCGAGTGATGAGGAAGCGGCTTCTTAAAAAGACATTTGAAATGATCTTGGGTGTCTCACTTAGTGAAAATCAAGAGGATTATAGAAAATTTTGGGATAACTTTGGAAAGAATATGAAATTGGGTGTCATTGAGGACCATGCAAATCACAAGAAATTGGCTCCTCTCCTTCGCTTCTATTCATCGTTTAATGAGGACGAGTTAGTTAGCTTGGACAATTACGTTGATAGTATGAAAGAAGGCCAGAAGGCTATTTATTATATTGCTGCAGACAGCATCACCAGTGCGAGAAATGCACCCTTCTTAGAAAAACTTATAGAGAAAGAGTATGAGGTGTTGTTCCTTATTGATCCAATTGACGAGGTCGCCATTCAAAACCTTAAGTCTTATAAAGACAAGCAGTTTGTGGATATCACCAAAGAAGACTTGGATTTGGGCGATCAAGATGAAGCAAAGGAAAAAGAAGTCAAAAAGGAATATACACCTGTCTGTGAGTGGATGAAGAATCATTTAGGAGAGCAAGTGGCAAAGGTTCAGATATCAAATAGACTAAGCTCTTCACCATGTGTGCTTGTCTCAGGAAAGTTTGGATGGTCAGCAAACATGGAAAGGATCATGAAAGCTCAATCTCTTGGGGATACATCTAGCATGTCGTTCATGCATGGAAGAAGAATCTTGGAGATCAACCCAGATCATCCCATTATCCAGAGTTTGAACGCTGCTTGCAAAGAGGATCCCCAGAATCCTGATGCCTTGAGAGCAATCGATCTATTATATAATACGGCTCTAATTTCCAGTGGTTATACTCCTGAGAATCCTGCTGAAGTGGGTGGAAAGATTTACAATATGATGGATGCCGCACTTGCTGGAAAATGGAGAGCTCCAAGCTCGGAAGCTGCTAATGTGGATGCACTGCAACCGTCCAGTGAAGTTGTTGAGCCTGCTGAGGCAGAGATTGTCCAGCCTGTTGAGGCAGAGGTTGTTGACCCTGCTGAAGTGAAAGTTGAGGGTAGAGCCTCAAACAACTAGTCTCTTTGGAGCCTTATTAAGGGGATATGGTCAGGGCTCACATAGTTTGTGAAAATTGATTGTATACAAGGTGTAGGAGGCTAAATGAGTTTTGATCTTTGATTGAGAGTGTTTAACTGTATATTGCAGACATTTTTGAAATCATCTCTCCATTTCGTCTCTAGGCAGGTTACAATTTTAGAAGCATACTCGTCTCTAGGCAGATCTCTAGGCTGGTTACAACTTTAGAAGCATACAAGTAGTTTCTATAAGAAAGCAAATTAGCTGGGTTTTTGTGATAGGAATACATGTCTTGTGTTTTGAGCTTTGAACACTGGTATCGTGTTTTGAGCCTAAATTGGAAATTGATCTTATGGCTGAAATTTGGTATGAATGTTGCTGTTATCTGGATCGAACTGCTTTGAGCCTGAATTGGAAAACTGATCTAATGACTGAAATCTGGTATGAGCGTTGCTGTTATCTGGACCTCATATTCCATTGTAACAACCACATCATATAAAATTTCAATAAGATCGGTGTTTCAATTTAAGCTTGTAACAATGGAATATGAGGTCCAGATAACAGCAACGCTCATACCAGATTTCAGTCATTAGATCAGTTTTCCAATTCAGGCTCAAAGCAGTTCGATCCAGGTAACAGCAACGTTCATACCAAATTTCAGCCATAAGATCAATTTCCAATTTAGGCTCAAAACACGATACCAGTGTTCAAAGCTCAAAACACAAGACATGTATTCCTATCACAAAAACCCAGCTAATTTGCTTTCTTATAGAAACTACTTGTATGCTTCTAAAGTTGTAACCAGCCTAGAGATCTGCCTAGAGACGAGCATGCTTCTAAAATTGTAACCTGCCTAGAGACGAGTATGCTTCTAAAATTGTAACCTGCCTAGAGACGAAATGGAGAGATGATTTCAAAAATGTCTGCAATATACAGTTAAACACTCTCAATCAAAGATCAAAACTCATTTAGCCTCCTACACCTTGTATACAATCAATTTTCACAAACTATGTGAGCCCTGACCATATCCCCTTAATAAGGCTCCAAAGAGACTAGTTGTTTGAGGCTCTACCCTCAACTTTCACTTCAGCAGGGTCAACAACCTCTGCCTCAACAGGCTGGACAATCTCTGCCTCAGCAGGCTCAACAACTTCACTGGACGGTTGCAGTGCATCCACATTAGCAGCTTCCGAGCTTGGAGCTCTCCATTTTCCAGCAAGTGCGGCATCCATCATATTGTAAATCTTTCCACCCACTTCAGCAGGATTCTCAGGTGTATAACCACTGGAAATTAGAGCCGTATTATATAATAGATCGATTGCTCTCAAGGCATCAGGATTCTGGGGATCCTCTTTGCAAGCAGCGTTCAAACTCTGGATAATGGGATGATCTGGGTTGATCTCCAAGATTCTTCTTCCATGCATGAACGACATGCTAGATGTATCCCCAAGAGATTGAGCTTTCATGATCCTTTCCATGTTTGCTGACCATCCAAACTTTCCTGAGACAAGCACACATGGTGAAGAGCTTAGTCTATTTGATATCTGAACCTTTGCCACTTGCTCTCCTAAATGATTCTTCATCCACTCACAGACAGGCGTATATTCCTTTTTGACTTCTTTTTCCTTTGCTTCATCTTGATCGCCCAAATCCAAGTCTTCTTTGGTGATATCCACAAACTGCTTGTCTTTATAAGACTTAAGGTTTTGAATGGCGACCTCGTCAATTGGATCAATAAGGAACAACACCTCATACTCTTTCTCTATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v1.1_unigene20490

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	heat shock protein, putative; K04079 molecular chaperone HtpG	-	-	70%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	41%
Blast2go	heat shock	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	85%
Blast2go	response to salt stress	GO:0009651	Biological Process	85%
Blast2go	response to chlorate	GO:0010157	Biological Process	85%
Blast2go	response to heat	GO:0009408	Biological Process	85%
Blast2go	de-etiolation	GO:0009704	Biological Process	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Heat shock protein Hsp90	IPR001404	-	0.0	85%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Misassembled

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: Coding sequence with some errors, ERROR#1, contains sense and antisense hits!!!, putative chimeric sequence,

Fln nts: CGTCGTGACCTTAGCTGTCACTCAATATTTATGAAGAATAATTTGTGTATGTTCATGTTTTTTGTCTTAATAGTTGTATTGTGTATGTACAATTATTTTAATCATTCTTAAGTTTGTGTTTCATCTCTAGCTGACCTAATTTCTTGTGGTGCATTTATAAGTGCCACTGAAAATTTTCTTCTCAGAATAACCAATTGATGATATGCAGTTACTCATTTGTTTTTGAGTTGTGCATAACTGGTTAACTCTTGTGTAGATGCGCAACTCAAAAGAAGTGACTGTGGAGGAATACAATGAATTTTACAAGAAAACTTTCAATGAATATATGGATCCTCTTGCATGCTCTCACTTCACTACAGAGGGTGAAGTTGAGTTCAGAAGTATTCTGTATGTACCTACTATTACTCCCATGGGCAGGGAAGACATTGTAAATCCCAAGACAAAGAATATCCGTCTATATGTGAAACGTGTGTTTATTTCAGATGATTTTGATGGGGAATTGTTTCCACGCTATTTAAGCTTTGTCAAAGGTGTTGTGGATTCAAATGACTTGCCTCTTAATGTTTCTAGGGAGATCCTTCAGGAAAGCCGCATTGTCCGAGTGATGAGGAAGCGGCTTCTTAAAAAGACATTTGAAATGATCTTGGGTGTCTCACTTAGTGAAAATCAAGAGGATTATAGAAAATTTTGGGATAACTTTGGAAAGAATATGAAATTGGGTGTCATTGAGGACCATGCAAATCACAAGAAATTGGCTCCTCTCCTTCGCTTCTATTCATCGTTTAATGAGGACGAGTTAGTTAGCTTGGACAATTACGTTGATAGTATGAAAGAAGGCCAGAAGGCTATTTATTATATTGCTGCAGACAGCATCACCAGTGCGAGAAATGCACCCTTCTTAGAAAAACTTATAGAGAAAGAGTATGAGGTGTTGTTCCTTATTGATCCAATTGACGAGGTCGCCATTCAAAACCTTAAGTCTTATAAAGACAAGCAGTTTGTGGATATCACCAAAGAAGACTTGGATTTGGGCGATCAAGATGAAGCAAAGGAAAAAGAAGTCAAAAAGGAATATACACCTGTCTGTGAGTGGATGAAGAATCATTTAGGAGAGCAAGTGGCAAAGGTTCAGATATCAAATAGACTAAGCTCTTCACCATGTGTGCTTGTCTCAGGAAAGTTTGGATGGTCAGCAAACATGGAAAGGATCATGAAAGCTCAATCTCTTGGGGATACATCTAGCATGTCGTTCATGCATGGAAGAAGAATCTTGGAGATCAACCCAGATCATCCCATTATCCAGAGTTTGAACGCTGCTTGCAAAGAGGATCCCCAGAATCCTGATGCCTTGAGAGCAATCGATCTATTATATAATACGGCTCTAATTTCCAGTGGTTATACTCCTGAGAATCCTGCTGAAGTGGGTGGAAAGATTTACAATATGATGGATGCCGCACTTGCTGGAAAATGGAGAGCTCCAAGCTCGGAAGCTGCTAATGTGGATGCACTGCAACCGTCCAGTGAAGTTGTTGAGCCTGCTGAGGCAGAGATTGTCCAGCCTGTTGAGGCAGAGGTTGTTGACCCTGCTGAAGTGAAAGTTGAGGGTAGAGCCTCAAACAACTAG___TCTCTTTGGAGCCTTATTAAGGGGATATGGTCAGGGCTCACATAGTTTGTGAAAATTGATTGTATACAAGGTGTAGGAGGCTAAATGAGTTTTGATCTTTGATTGAGAGTGTTTAACTGTATATTGCAGACATTTTTGAAATCATCTCTCCATTTCGTCTCTAGGCAGGTTACAATTTTAGAAGCATACTCGTCTCTAGGCAGATCTCTAGGCTGGTTACAACTTTAGAAGCATACAAGTAGTTTCTATAAGAAAGCAAATTAGCTGGGTTTTTGTGATAGGAATACATGTCTTGTGTTTTGAGCTTTGAACACTGGTATCGTGTTTTGAGCCTAAATTGGAAATTGATCTTATGGCTGAAATTTGGTATGAATGTTGCTGTTATCTGGATCGAACTGCTTTGAGCCTGAATTGGAAAACTGATCTAATGACTGAAATCTGGTATGAGCGTTGCTGTTATCTGGACCTCATATTCCATTGTAACAACCACATCATATAAAATTTCAATAAGATCGGTGTTTCAATTTAAGCTTGTAACAATGGAATATGAGGTCCAGATAACAGCAACGCTCATACCAGATTTCAGTCATTAGATCAGTTTTCCAATTCAGGCTCAAAGCAGTTCGATCCAGGTAACAGCAACGTTCATACCAAATTTCAGCCATAAGATCAATTTCCAATTTAGGCTCAAAACACGATACCAGTGTTCAAAGCTCAAAACACAAGACATGTATTCCTATCACAAAAACCCAGCTAATTTGCTTTCTTATAGAAACTACTTGTATGCTTCTAAAGTTGTAACCAGCCTAGAGATCTGCCTAGAGACGAGCATGCTTCTAAAATTGTAACCTGCCTAGAGACGAGTATGCTTCTAAAATTGTAACCTGCCTAGAGACGAAATGGAGAGATGATTTCAAAAATGTCTGCAATATACAGTTAAACACTCTCAATCAAAGATCAAAACTCATTTAGCCTCCTACACCTTGTATACAATCAATTTTCACAAACTATGTGAGCCCTGACCATATCCCCTTAATAAGGCTCCAAAGAGACTAGTTGTTTGAGGCTCTACCCTCAACTTTCACTTCAGCAGGGTCAACAACCTCTGCCTCAACAGGCTGGACAATCTCTGCCTCAGCAGGCTCAACAACTTCACTGGACGGTTGCAGTGCATCCACATTAGCAGCTTCCGAGCTTGGAGCTCTCCATTTTCCAGCAAGTGCGGCATCCATCATATTGTAAATCTTTCCACCCACTTCAGCAGGATTCTCAGGTGTATAACCACTGGAAATTAGAGCCGTATTATATAATAGATCGATTGCTCTCAAGGCATCAGGATTCTGGGGATCCTCTTTGCAAGCAGCGTTCAAACTCTGGATAATGGGATGATCTGGGTTGATCTCCAAGATTCTTCTTCCATGCATGAACGACATGCTAGATGTATCCCCAAGAGATTGAGCTTTCATGATCCTTTCCATGTTTGCTGACCATCCAAACTTTCCTGAGACAAGCACACATGGTGAAGAGCTTAGTCTATTTGATATCTGAACCTTTGCCACTTGCTCTCCTAAATGATTCTTCATCCACTCACAGACAGGCGTATATTCCTTTTTGACTTCTTTTTCCTTTGCTTCATCTTGATCGCCCAAATCCAAGTCTTCTTTGGTGATATCCACAAACTGCTTGTCTTTATAAGACTTAAGGTTTTGAATGGCGACCTCGTCAATTGGATCAATAAGGAACAACACCTCATACTCTTTCTCTATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

Supercontig20490___NWLTLV*MRNSKEVTVEEYNEFYKKTFNEYMD--PLACSHFTTEGEVEFRSILYVPTITPMGREDIVNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRVMRKRLLKKTFEMILGVSL---------------SENQED------YRKFWDNFGKNMKLGVIEDHANHKKLAPLLRFYSSFNEDELVSLDNYVDSMKEGQKAIYYIAADSITSARNAPFLEKLIEKEYEVLFLIDPIDEVAIQNLKSYKDKQFVDITKEDLDLGDQDEAKEKEVKKEYTPVCEWMKNHL-GEQVAKVQISNRLSSSPCVLVSGKFGWSANMERIMKAQSLGDTSSMSFMHGRRILEINPDHPIIQSLNAACKEDPQNPDALRAIDLLYNTALISSGYTPENPAEVGGKIYNMMDAALAGKWRAPSSEAANVDALQPSSEVVEPAEAE
A7YAU9_______________NDVKAVWLRNPKEVTDEEYAKFYHSLAKDFSEEKPLAWSHFTAEGDVEFKSILFIPPKAPHDLYESYCNAKANIKLYVRRVFISDEFE-EFLPKYLGFLMGIVNSDTLPLNVSREMLQQHNSLNTIKKKLIRKALDMIRRIAEEDLDESDAKGKTDAESESEPDTEKKGKYVKFWNEFGKSIKLGIIEDASNRNHLAKLLRFESTKSGSKLASLDQYISRMKPGQKDIYYITGSSKEQLEKSPFLEKLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKIG--KDSKDKEIKDSFKELTNWWKDVLSSENVDSVKISNRLDNTPGVVVTSKYGWSANMERIMQSQTLSDANRQSYMRGKRVLEINPKHPIIKELRERVTQNPEEENIKQTARLIYQTALMESGFILNDPKEFATSIYSTIKTTLNVN---PDATVEEEDETEEEVEVETKEEIE

SNPs (tot: 88)

Position	A %	C %	G %	T %	Probability
388			66	33	0.997452
398	33		66		0.997452
399		66		33	0.997452
785	16			83	0.994512
786	83	16			0.994512
787	83	16			0.994512
790	83	16			0.994512
791			83	16	0.994512
793	83			16	0.994512
797		16	83		0.994512
799		16		83	0.994512
819	16		83		0.994512
885	90			10	0.90298
886			90	10	0.90298
887	90		10		0.90298
888	90		10		0.90298
889	90	10			0.90298
1081	33		66		0.997452
2509	92		7		0.999602
2513	7			92	0.999602
2517	7			92	0.999602
2520	92			7	0.999602
2521		7	92		0.999602
2526	88	11			1.0
2527	88		11		1.0
2593		90	9		0.999872
2596	9			90	0.999872
2597		9		90	0.999872
2602	9			90	0.999872
2603	9	90			0.999872
2604		90	9		0.999872
2605			9	90	0.999872
2606	90			9	0.999872
2610		90	9		0.999872
2611	9			90	0.999872
2612		9		90	0.999872
2618		89	10		0.999919
2621			10	89	0.999919
2623	89	10			0.999919
2625	10			89	0.999919
2626			10	89	0.999919
2627			10	89	0.999919
2632	73			5	1.0
2633	84		15		1.0
2635		78	5	15	1.0
2636			23	76	1.0
2640	18	6		75	1.0
2641		25	75		1.0
2646	25	75			1.0
2647	18	6		75	1.0
2649	81		18		1.0
2650		81		18	1.0
2653		20		80	1.0
2654	80		20		1.0
2655	21			78	1.0
2657		78	21		1.0
2736	10	90			0.90298
2737		90	10		0.90298
2740	90		10		0.90298
2745		10	90		0.90298
2747	10			90	0.90298
2750	90			10	0.90298
2753	90		10		0.90298
2754	10			90	0.90298
2756			12	87	0.992554
2764	16		83		0.994512
2902	14			85	0.993533
2944	14		85		0.993533
3084		10	90		0.90298
3330		11	88		0.923564
3375	83		16		0.994512
3376	20	80			0.995493
3377		83	16		0.994512
3379		80	20		0.995493
3381		20		80	0.995493
3383		80	20		0.995493
3384		20		80	0.995493
3386	20			80	0.995493
3387	20			80	0.995493
3388			20	80	0.995493
3389		80	20		0.995493
3395		25		75	0.996473
3396	25		75		0.996473
3402	75			25	0.996473
3403		75		25	0.996473
3404	66			33	0.997452
3405			66	33	0.997452
3407		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain