SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20477

Length: 2521 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20477
CGTCGTGACCTTGGCTGTCACTCAATTTTTTGGCTTACAGCTGAACAGAGGAGCAGAAGGAGAGGGGAGCGAGCAAACGACGAGCCTGTACAGGTATGTGAGAAGCAATGTTACATCTTGGTGGACAATGGCTGCAGCCAACCTAAAATACCAATGTTATTGCAAGGTTAGCTTGATAACACACCCTTGCATGAAAGGCAGAGACTTGGATATTTGGTAGCATTTCTAGGGGGTCTATAAAAGGATAAAAACACTTTCGAGAGAATATTCACTTAGACTTCATGGGTGGAGCTTGTTCAAGAAAAAGAGATCAACAAGACATTGCAGAAGACCTCCAGCGAGGTGGTTCAGGGAGGTCTAGTAGAAGTATCAGCCTTAGATGGCCAATAAGTCCACGTATAGCAGTGGACATTGGCAAAGGAGATGGGAAAGCTCCTTCTCTTCTAGAGCTTTCCATTCGAAAAATCTGTGAGAATATTGGCAGATATGACTCTCTTAATATGCTTCCTAGAGATTTGAGTCAGCAGATTTTTAATGAGTTGGTTCGTACTCAAGTTCTCACAAGAACTTCGCTCCACACATTTCAAGACTGTAATCTTCAGGATGTTTTTCTGGGAGAATACCCTGGTGTGGAAGATAGTTGGCTTGAAATTCTTGCAACGCAGGGACTGTCCCTCCTGGCAGTTGATATTTCTAGTTCAGACGTGACAGATTCAGGGCTTTCATTATTGCAAAAGTGTCTAAATTTGCAGCATCTAAATTTTAACTATTGTCAACGTATTTCTGATGCTGGACTAGAATATCTCACAGGACTTACAAACTTGACTTCACTTAGTTTTAAAAAGAGCAATGCAATAACTGCATCAGGCTTGCGTGCCTTAGCTGGTCTTGTGAACTTGACAAGTCTGGATCTGGAGATGTGCTCAGGGATTCATGGTGGATTGGTGCATCTAAAAGGACTTACAAAATTAGAAGCATTGAACATCGGATGGTGCAATTGTATAAAGAACTCAGATATCAAGCCTCTGGCTGGGCTTACAAACTTGAAGGAGCTGCAAATTTCTCGAAGTAAAGTCACTGATTCAGGCATTGCTTTTTTGAAAGGCCTGAAAAAACTTTCTTTACTCAACATGGATGGCTGTCCGGTGACTGTGGCATGCATGGATACAATTTCAGGTCTTGATGCTTTGACATATCTCAACATAAAGTCATGCTGTATAACTGATGCTGGATGCCAAAAGCTTGAAGGACTTTCAAATTTAAAGACTCTGAACATGGCCTATAACAATATTACACATGCTGGCCTAGTACATCTTAAAGGCTTGACAAACTTGGAGAACTTAAATTTGGATTCGTGTAGAGTTGGAGACGAGGGAATGGAATGTTTGAGAGGGCTTACTTCTCTGAAGAACTTGGATTTGTCAGACTCTGAAGTAGGCAGCAATGGACTCCAGCATTTGGCAGGGTTACGGAATTTGGAAAGTTTGAACCTGTCATTCACCCAAGTAACTGATATTGGCTTGCGAAAGCTATCTGGGTTGACAGCGCTTAAATCTCTGAATCTGGATACACGACAAGTTACAGACGGTGGATTGTCTGCTCTTACAAGTCTGACTGGCTTGACACATCTGGATCTTTTTGGAGCCCGTATTACAGATTATGGCACAAACTGTTTAAGATACTTCAAGAAGCTCCAGTCATTAGAGCTATGTGGTGGAAGTATTACAGATGCAGGAGTCAAGAATATCAAAGACCTCACTTTGATGACATCATTAAATTTATCACAAAACTCCCATCTCACCGATGGTGCTTTAGAATTTGTCTCAGGAATGACTGCCCTTGTCTCGTTGAACGTTTCAAATACTCGTGTAACAAATACAGGTCTACAGCATCTCAGGCCATTGAAAAATTTGACCTCTTTATCTTTGCAAGCCTGCAAGGTTACTTGGCCTGAGATTAAGAAGTTGCAAGCAACTCTTCCGAATCTGGCTGGTGTCCGTCTTGATTAAATTTAGTCTTCCAAAGATGAAAGCAATATTTCGTTTCAAGGAAGCTTCTATTGAAAACAAAGTTGATAGACTATACTAACCTGAGTGTGTAAATAAGCTAAGACCTGAAGTTTTAAAATGTGTATGTATAGCTGGTCCATGCACTTATATCTGCAAAACTTGAAATGGCATTGTACATAGTGACCAAAACTTTCCTATCGCCACTGTTTACTTTGCATAGATAGAATATCTATTATGTACATAATCCAACTCTGTAAATTTTGTATAGCTCATGTTTCATCTCCATCTGCAATTGGCATACCCTTACTTAAACTATCAACTCTAGGTTTGGGGCTTAGACATATGATGAATTGCAAGGAATTGTTGATATTCTGAACCTTGCAATTTTTGTCGTATTGTAAAGTTCTATATATGAACCGTTCTATATATGTAAAGTTATGGCATTCAATGCGAACCTTTGTTATGATGTCATTTTGAAAGTGAATGTGCAATACCTGCTCTTCTTTTAAAAA

Ace file of the UniGene sp_v1.1_unigene20477

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat family protein	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	64%
Blast2go	leucine-rich repeat family protein	-	-	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7T4Y4

Fln msg:

Fln protein: MGGACSRKRDQQDIAEDLQRGGSGRSSRSISLRWPISPRIAVDIGKGDGKAPSLLELSIRKICENIGRYDSLNMLPRDLSQQIFNELVRTQVLTRTSLHTFQDCNLQDVFLGEYPGVEDSWLEILATQGLSLLAVDISSSDVTDSGLSLLQKCLNLQHLNFNYCQRISDAGLEYLTGLTNLTSLSFKKSNAITASGLRALAGLVNLTSLDLEMCSGIHGGLVHLKGLTKLEALNIGWCNCIKNSDIKPLAGLTNLKELQISRSKVTDSGIAFLKGLKKLSLLNMDGCPVTVACMDTISGLDALTYLNIKSCCITDAGCQKLEGLSNLKTLNMAYNNITHAGLVHLKGLTNLENLNLDSCRVGDEGMECLRGLTSLKNLDLSDSEVGSNGLQHLAGLRNLESLNLSFTQVTDIGLRKLSGLTALKSLNLDTRQVTDGGLSALTSLTGLTHLDLFGARITDYGTNCLRYFKKLQSLELCGGSITDAGVKNIKDLTLMTSLNLSQNSHLTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKKLQATLPNLAGVRLD*

Protein Length: 577

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTGGCTTACAGCTGAACAGAGGAGCAGAAGGAGAGGGGAGCGAGCAAACGACGAGCCTGTACAGGTATGTGAGAAGCAATGTTACATCTTGGTGGACAATGGCTGCAGCCAACCTAAAATACCAATGTTATTGCAAGGTTAGCTTGATAACACACCCTTGCATGAAAGGCAGAGACTTGGATATTTGGTAGCATTTCTAGGGGGTCTATAAAAGGATAAAAACACTTTCGAGAGAATATTCACTTAGACTTC_-_ATGGGTGGAGCTTGTTCAAGAAAAAGAGATCAACAAGACATTGCAGAAGACCTCCAGCGAGGTGGTTCAGGGAGGTCTAGTAGAAGTATCAGCCTTAGATGGCCAATAAGTCCACGTATAGCAGTGGACATTGGCAAAGGAGATGGGAAAGCTCCTTCTCTTCTAGAGCTTTCCATTCGAAAAATCTGTGAGAATATTGGCAGATATGACTCTCTTAATATGCTTCCTAGAGATTTGAGTCAGCAGATTTTTAATGAGTTGGTTCGTACTCAAGTTCTCACAAGAACTTCGCTCCACACATTTCAAGACTGTAATCTTCAGGATGTTTTTCTGGGAGAATACCCTGGTGTGGAAGATAGTTGGCTTGAAATTCTTGCAACGCAGGGACTGTCCCTCCTGGCAGTTGATATTTCTAGTTCAGACGTGACAGATTCAGGGCTTTCATTATTGCAAAAGTGTCTAAATTTGCAGCATCTAAATTTTAACTATTGTCAACGTATTTCTGATGCTGGACTAGAATATCTCACAGGACTTACAAACTTGACTTCACTTAGTTTTAAAAAGAGCAATGCAATAACTGCATCAGGCTTGCGTGCCTTAGCTGGTCTTGTGAACTTGACAAGTCTGGATCTGGAGATGTGCTCAGGGATTCATGGTGGATTGGTGCATCTAAAAGGACTTACAAAATTAGAAGCATTGAACATCGGATGGTGCAATTGTATAAAGAACTCAGATATCAAGCCTCTGGCTGGGCTTACAAACTTGAAGGAGCTGCAAATTTCTCGAAGTAAAGTCACTGATTCAGGCATTGCTTTTTTGAAAGGCCTGAAAAAACTTTCTTTACTCAACATGGATGGCTGTCCGGTGACTGTGGCATGCATGGATACAATTTCAGGTCTTGATGCTTTGACATATCTCAACATAAAGTCATGCTGTATAACTGATGCTGGATGCCAAAAGCTTGAAGGACTTTCAAATTTAAAGACTCTGAACATGGCCTATAACAATATTACACATGCTGGCCTAGTACATCTTAAAGGCTTGACAAACTTGGAGAACTTAAATTTGGATTCGTGTAGAGTTGGAGACGAGGGAATGGAATGTTTGAGAGGGCTTACTTCTCTGAAGAACTTGGATTTGTCAGACTCTGAAGTAGGCAGCAATGGACTCCAGCATTTGGCAGGGTTACGGAATTTGGAAAGTTTGAACCTGTCATTCACCCAAGTAACTGATATTGGCTTGCGAAAGCTATCTGGGTTGACAGCGCTTAAATCTCTGAATCTGGATACACGACAAGTTACAGACGGTGGATTGTCTGCTCTTACAAGTCTGACTGGCTTGACACATCTGGATCTTTTTGGAGCCCGTATTACAGATTATGGCACAAACTGTTTAAGATACTTCAAGAAGCTCCAGTCATTAGAGCTATGTGGTGGAAGTATTACAGATGCAGGAGTCAAGAATATCAAAGACCTCACTTTGATGACATCATTAAATTTATCACAAAACTCCCATCTCACCGATGGTGCTTTAGAATTTGTCTCAGGAATGACTGCCCTTGTCTCGTTGAACGTTTCAAATACTCGTGTAACAAATACAGGTCTACAGCATCTCAGGCCATTGAAAAATTTGACCTCTTTATCTTTGCAAGCCTGCAAGGTTACTTGGCCTGAGATTAAGAAGTTGCAAGCAACTCTTCCGAATCTGGCTGGTGTCCGTCTTGATTAA___ATTTAGTCTTCCAAAGATGAAAGCAATATTTCGTTTCAAGGAAGCTTCTATTGAAAACAAAGTTGATAGACTATACTAACCTGAGTGTGTAAATAAGCTAAGACCTGAAGTTTTAAAATGTGTATGTATAGCTGGTCCATGCACTTATATCTGCAAAACTTGAAATGGCATTGTACATAGTGACCAAAACTTTCCTATCGCCACTGTTTACTTTGCATAGATAGAATATCTATTATGTACATAATCCAACTCTGTAAATTTTGTATAGCTCATGTTTCATCTCCATCTGCAATTGGCATACCCTTACTTAAACTATCAACTCTAGGTTTGGGGCTTAGACATATGATGAATTGCAAGGAATTGTTGATATTCTGAACCTTGCAATTTTTGTCGTATTGTAAAGTTCTATATATGAACCGTTCTATATATGTAAAGTTATGGCATTCAATGCGAACCTTTGTTATGATGTCATTTTGAAAGTGAATGTGCAATACCTGCTCTTCTTTTAAAAA

Fln Alignment:

sp_v1.1_unigene20477___MGGACSRKRDQQDIAEDLQXXXXXXXXXXISLRWPISP--RIAVDIGKGDGKAPSLLELSIRKICENIGRYDSLNMLPRDLSQQIFNELVRTQVLTRTSLHTFQDCNLQDVFLGEYPGVEDSWLEILATQGLSLLAVDISSSDVTDSGLSLLQKCLNLQHLNFNYCQRISDAGLEYLTGLTNLTSLSFKKSNAITASGLRALAGLVNLTSLDLEMCSGIHGGLVHLKGLTKLEALNIGWCNCIKNSDIKPLAGLTNLKELQISRSKVTDSGIAFLKGLKKLSLLNMDGCPVTVACMDTISGLDALTYLNIKSCCITDAGCQKLEGLSNLKTLNMAYNNITHAGLVHLKGLTNLENLNLDSCRVGDEGMECLRGLTSLKNLDLSDSEVGSNGLQHLAGLRNLESLNLSFTQVTDIGLRKLSGLTALKSLNLDTRQVTDXXXXXXXXXXXXXXXDLFGARITDYGTNCLRYFKKLQSLELCGGSITDAGVKNIKDLTLMTSLNLSQNSHLTDGALEFVSGMTALVSLNVSNTRVTNTGLQHLRPLKNLTSLSLQACKVTWPEIKKLQAT-LPNLAGVR
D7T4Y4_______________MGGVCSRKRDQQVDEDGVQIQVSGRYGKSGSSKWLRTSFSRPVIDCQLGRESCPSLMELCIHKICEDIDRYTKFSMLPRDISQQIFDNFVDSHCLTSASLEAFRDCAIQDVNLGEYPEVNDSWMDIISSQGLSLLSVDLSGSSVTDDGLSLLKDCSNIQVLSFNYCDQISEPGLKNISGLSNLTSLSFKKSNTVTAEGMRAFSSLVNLAKLDLERCSRIHGGLIHLKGLTKLESLNIRYCKCITDSDLKALSGLTSLKELQMSCSNITDIGISYLKGLCKLMLLDVEGCHVTTSCLDSLSALVALSYLNLNRCGLSDVGCEKFSGLKNLKVLNMGFNNITDACLVHLKGLTNLESLNLDSCSIEDEGLANLTGLSLLKCLELSDTKVGSNGLCHLSGLTKLESLNLSFTLVTDSGLKKLCGLTSLKSLNLDARQITDAGLAAITSLTGLTHLDLFGARISDAGTNCLRHFKNLQTLEICGGGLTDAGVKNIKGLASLTLLNLSQNCNLTDKTLEMISGLTALVSLNVSNSRITNNGLQHLKPLKNLLSLSLESCKVTASEIRKLQSTALPNLVSFR

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
31	33			33	0.997753
37			33	66	0.997452
38			33	66	0.997452
2453		83		16	0.999991
2466		80	20		0.995493
2485		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain