SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20470

Length: 1035 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20470

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein L2 n=3 Tax=Pinus monticola RepID=D3IZ06_PINMO	-	-	91%
FL-Next	tr=Thaumatin-like protein L2; Pinus monticola (Western white pine) (Strobus monticola).	-	-	91%
Blast2go	thaumatin-like protein	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thaumatin, pathogenesis-related	IPR001938	-	0.0	81%
Blast2go	Thaumatin, conserved site	IPR017949	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D3IZ06

Fln msg:

Fln protein: MVGRNSLSGSIWIVVTVTLFAINVHLLQVAQGATFTVKNQCPYTVWAAASPGGGKALRQGQTWTFNVAAGTKQARIWGRTGCSFDASGHGRCNTGDCGGLLNCQGYGSVPATHLDYALNQYQNQDFYDISLVDGFNIPLSATPSNSNCKKIGCTSNINAICPSQLKVTDGCKSACAAFNTPQYCCTGAYLNNCPPTNYSKFFKQQCPQAYSYAKDDASSTFTCPSGGNYNVVFCG*

Protein Length: 237

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCCTCAAGTATTCTGTCTCTGCATTAAAATTTTTCATTAAATTGGATCGAGTCGTCTTTAAGTTGCTGCCTGGCCATTACA_-_ATGGTGGGTAGAAATAGTTTATCAGGTTCCATTTGGATCGTGGTGACAGTAACATTATTCGCCATCAATGTTCATCTGCTGCAAGTTGCCCAAGGGGCGACATTCACAGTGAAGAACCAGTGCCCATACACGGTCTGGGCAGCTGCAAGTCCTGGTGGCGGCAAAGCACTGAGACAGGGTCAAACATGGACTTTTAACGTTGCCGCAGGAACAAAACAAGCCAGAATCTGGGGTCGTACCGGATGCTCCTTCGACGCGAGCGGGCATGGCAGGTGCAACACTGGTGATTGCGGCGGGTTGCTCAATTGTCAAGGCTATGGAAGTGTCCCTGCAACTCACCTTGACTATGCACTCAATCAGTACCAGAATCAAGATTTCTATGACATCTCTTTGGTGGATGGTTTCAACATCCCTCTTTCTGCAACTCCTTCCAACTCCAATTGCAAGAAAATAGGATGCACTAGCAACATAAATGCCATCTGCCCTTCGCAGTTAAAAGTAACTGACGGGTGCAAAAGTGCTTGTGCTGCTTTCAATACCCCTCAATACTGCTGCACGGGAGCCTACCTCAACAACTGCCCTCCCACAAACTATTCGAAATTCTTCAAGCAGCAATGCCCACAGGCTTACAGCTATGCCAAAGACGATGCCAGTAGCACCTTCACCTGCCCTTCTGGTGGTAATTACAACGTCGTCTTCTGCGGTTAA___CACCATCATATACCACTAAATAAAGGCAAGTCCCTGTACGCCAAGGTTGGTGGTGCTGATTACAACATCATGATATCCCAATAAACAACGCCAAATAAAGCCATGCAATATGAAAGAGAATTGAAAGCGATACTGTTGAGATTGATTGAATGATCTTAAAGATTCTTATATGAGTGGCACGCTCTTACAACTCGCGCTTGAATTGGCTTTCTATGGTTTTCC

Fln Alignment:

sp_v1.1_unigene20470___MVGRNSLSGSIWIVVTVTLFAINVHLLQVAQGATFTVKNQCPYTVWAAASPGGGKALRQGQTWTFNVAAGTKQARIWGRTGCSFDASGHGRCNTGDCGGLLNCQGYGSVPATHLDYALNQYQNQDFYDISLVDGFNIPLSATPSNSNCKKIGCTSNINAICPSQLKVTDGCKSACAAFNTPQYCCTGAYLNNCPPTNYSKFFKQQCPQAYSYAKDDASSTFTCPSGGNYNVVFCG
D3IZ06_______________MAGRNSLSGSIWITVTVTLVAVNVYL-QVAEGATFTVRNQCTYTVWAAASPGGGKALGQGQTWTFNVAAGTKGARIWGRTGCSFDASGRGRCNTGDCGGLLNCQGYGSVPATLFEYALNQYQNQDFYDISLVDGFNIPLSATPSNSNCKKIGCTSNINAICPSQLKVTDGCKSACAAFNTPQYCCTGAYLNNCSPTNYSKFFKQQCPQAYSYAKDDATSTFTCPSGANHNVVFCG

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
450		11	88		0.923564
453			11	88	0.923564
459		88	11		0.923564
461	88		11		0.923564
462	11			88	0.923564
473	90	10			0.90298
474		10		90	0.90298
475		90		10	0.90298
476	90			10	0.90298
477	90		10		0.90298
479	90	10			0.90298
481			10	90	0.90298
484	10			90	0.90298
485	90	10			0.90298
487		10	90		0.90298
510		87		12	0.992554
570		14		85	0.993533
628		20		80	0.995493
631		20	80		0.995493
632		80	20		0.995493
636		20		80	0.995493
639		80	20		0.995493
640	75		25		0.996473
641	75	25			0.996473
643	75		25		0.996473
644		75		25	0.996473
646	25	75			0.996473
651	75			25	0.996473
675		75	25		0.996473
717			66	33	0.997452
724		66		33	0.997452
825	16	83			0.994512
847		16		16	0.988813
852		16		83	0.994512
862			66	33	1.0
869		83		16	0.994512
879		83		16	0.994512
890		60		40	1.0
899		20		80	0.995493
901	60			40	1.0
904		40		60	1.0
905		60		40	1.0
907	40	60			1.0
908	40			60	1.0
911	40	60			1.0
912	40			60	1.0
913			40	60	1.0
914		60		40	1.0
915		60		40	1.0
917	33			66	0.997452
918	33		66		0.997452
919	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain