SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20462

Length: 2079 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene20462
CGTCGTGACCTTGGCTGTCACTCATGTTTTAGTCCAGTGAAGCTTTAAATCGAAGACGAAGGTAGCTTGACGTGCAGCAAATTAAGCAGCCATTGGACGAGACGCGCGTACTGTGCTCNGTGACCTCTTTTTCGTGCAACGCGCGCTAATACTGTGAATTGGNNTTTGTGGNTTGGTNCACTTTCATTCTCATTCTACTAACCGCGGATCTCATTCGTTTCTTGCTTTGTTATATTTCAACTTTGGTGTCTGAGTTTCTGGAGAAGNATCTTAGAAGAAGACACAGAGGAATACAAGATGGTGAAGGTCTGCTGCATCGGAGCAGGGTATGTGGGTGGCCCCACCATGGCTGTGATAGCTCTGAAATGCCCCGCCATTGAAGTCGTAGTAGTTGACATCTCTGAGCCTCGGATTGACGCGTGGAACAGCGATCAGCTTCCGATCTATGAACCTGGCCTTGATGAAGTTGTCAAAGCCTGCAGGGGAAAAAACCTCTTTTTCAGTTCTGATGTTGAGAAGCATGTTGCTGAAGCCGACATTGTGTTCGTTTCAGTGAACACCCCCACGAAGACAAGAGGCCTCGGCCATGGAAAAGCTGCAGATCTGACCTACTGGGAAAGCGCGGCTAGAATGATAGCTGATGTTTCTAAATCAGACAAAATTGTCGTTGAGAAATCCACAGTTCCTGTTAAAACAGCTGAGGCAATTGAAAAGATTTTAACCCACAACAGCAAGGGAATTAATTTTCAAATTCTTTCTAACCCTGAGTTTCTTGCAGAGGGAACCGCTATAAACGACCTGTTGAAACCTGACCGCGTACTCATCGGAGGCCGAGAGACTCCTGAAGGGAAAAAAGCAGTGGAGGCCCTTAAAGCTGTATATGCCAATTGGGTTCCAAGGGATAACATTATCACAACCAACCTATGGTCTGCAGAGCTCTCCAAGTTGGCAGCAAATGCCTTTCTAGCCCAAAGGATTTCATCTGTGAATGCCATGTCTGCTCTCTGTGAAGCCACTGGGGCCAACATTTCCGAGGTCGCACATGCTGTGGGCAAAGACTCAAGGATTGGTCCACGTTTCTTGAATGCCAGTGTTGGTTTCGGTGGATCCTGCTTCCAGAAGGACATTCTGAATTTGGTGTACATTTGTGAATGCAATGGACTTCAAGAGGTTTCCAATTACTGGAAACGTGTAGTCAAGATCAACGACTATCAAAAGTCTAGATTCGTCAATCGCGTGGTTTCGTCCATGTTTAACACGGTCTCTGGAAAGAAGATTGCCATTCTCGGATTTGCCTTCAAGAAAGATACAGGGGACACTAGAGAAACCCCTGCCATTGATGTTTGCAAGGGACTTCTGGGGGACAAGGCCATTCTCAGCATCTATGATCCTCAAGTCACAGAGGATCAGATTCAAAGAGATCTTTCCATGAATAAATTTGATTGGGACCATCCTGCTCATCTGCAGCCCACGAGCCCTTCTGCGATCAAGCAAGTGACCGTTGTGTGGGATGCTTACGAAGCAGCCAAAGATGCTCATGGGGTTTGTATTGTTACAGAGTGGGATGAATTCAGGAATTTGGATTATCAGAGAATCTATGACAACATGCAGAAGCCCGCATTCATTTTTGATGGTCGCAACATTGTCAATGTGGACCGGCTTTGGCTGATTGGTTTCATTGTTTATTCAATTGGCAAGCCTCTAGACCCTTGGGTTAAGGATTTGCCTATATCAGCATAGCTCGGCCCATTATTTGCCAGATGGAGCAGTAGATGAAGGGTTCTCGGAATATTTTGGTCGGTTCATGCAAATTGAGAGTATTTTCTGTCATTAGGCTCTGGTAATATATAGGATATAATATTTAAATTACTAGAATTGTAGAGGGATTTTTGAATTTGTCCAACTTTTCAGAGTGGATGCTGAAACTCCTGCTTCTCGGAATTTTATATTGTATTAGAAGGATTCTTTTCTGCTGAATAACATTGGAATGTCATGTATTTGCTTCTTTCTGTTATGATATTGCGCTGTATTATCCTGAACCNGTCTGAATCGATTTGGAAATGAACTCATTAGTCTGCC

Ace file of the UniGene sp_v1.1_unigene20462 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TIDP3299; LOC100279549; K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22]	-	-	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	udp-glucose 6- expressed	-	-	94%

Source	ECs	Term	Type	e value	Identity
AutoFact	UDP-glucose 6-dehydrogenase.	EC:1.1.1.22	-	0.0	87%

Source	KEGGs	Term	Identity
AutoFact	Pentose and glucuronate interconversions	00040	87%
AutoFact	Ascorbate and aldarate metabolism	00053	87%
AutoFact	Starch and sucrose metabolism	00500	87%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520	87%
AutoFact	Metabolic pathways	01100	87%
AutoFact	Biosynthesis of secondary metabolites	01110	87%

Source	InterPros	Term	Type	Identity
Blast2go	UDP-glucose/GDP-mannose dehydrogenase, N-terminal	IPR001732	-	94%
Blast2go	6-phosphogluconate dehydrogenase, C-terminal-like	IPR008927	-	94%
Blast2go	UDP-glucose/GDP-mannose dehydrogenase, dimerisation	IPR014026	-	94%
Blast2go	UDP-glucose/GDP-mannose dehydrogenase, C-terminal	IPR014027	-	94%
Blast2go	NAD(P)-binding domain	IPR016040	-	94%
Blast2go	Nucleotide sugar dehydrogenase	IPR017476	-	94%
Blast2go	Cytochrome c1, transmembrane anchor, C-terminal	IPR021157	-	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ50

Fln msg:

Fln protein: MVKVCCIGAGYVGGPTMAVIALKCPAIEVVVVDISEPRIDAWNSDQLPIYEPGLDEVVKACRGKNLFFSSDVEKHVAEADIVFVSVNTPTKTRGLGHGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAINDLLKPDRVLIGGRETPEGKKAVEALKAVYANWVPRDNIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANISEVAHAVGKDSRIGPRFLNASVGFGGSCFQKDILNLVYICECNGLQEVSNYWKRVVKINDYQKSRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAILSIYDPQVTEDQIQRDLSMNKFDWDHPAHLQPTSPSAIKQVTVVWDAYEAAKDAHGVCIVTEWDEFRNLDYQRIYDNMQKPAFIFDGRNIVNVDRLWLIGFIVYSIGKPLDPWVKDLPISA*

Protein Length: 482

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTTAGTCCAGTGAAGCTTTAAATCGAAGACGAAGGTAGCTTGACGTGCAGCAAATTAAGCAGCCATTGGACGAGACGCGCGTACTGTGCTCaGTGACCTCTTTTTCGTGCAACGCGCGCTAATACTGTGAATTGGgtTTTGTGGcTTGGTaCACTTTCATTCTCATTCTACTAACCGCGGATCTCATTCGTTTCTTGCTTTGTTATATTTCAACTTTGGTGTCTGAGTTTCTGGAGAAGgATCTTAGAAGAAGACACAGAGGAATACAAG_-_ATGGTGAAGGTCTGCTGCATCGGAGCAGGGTATGTGGGTGGCCCCACCATGGCTGTGATAGCTCTGAAATGCCCCGCCATTGAAGTCGTAGTAGTTGACATCTCTGAGCCTCGGATTGACGCGTGGAACAGCGATCAGCTTCCGATCTATGAACCTGGCCTTGATGAAGTTGTCAAAGCCTGCAGGGGAAAAAACCTCTTTTTCAGTTCTGATGTTGAGAAGCATGTTGCTGAAGCCGACATTGTGTTCGTTTCAGTGAACACCCCCACGAAGACAAGAGGCCTCGGCCATGGAAAAGCTGCAGATCTGACCTACTGGGAAAGCGCGGCTAGAATGATAGCTGATGTTTCTAAATCAGACAAAATTGTCGTTGAGAAATCCACAGTTCCTGTTAAAACAGCTGAGGCAATTGAAAAGATTTTAACCCACAACAGCAAGGGAATTAATTTTCAAATTCTTTCTAACCCTGAGTTTCTTGCAGAGGGAACCGCTATAAACGACCTGTTGAAACCTGACCGCGTACTCATCGGAGGCCGAGAGACTCCTGAAGGGAAAAAAGCAGTGGAGGCCCTTAAAGCTGTATATGCCAATTGGGTTCCAAGGGATAACATTATCACAACCAACCTATGGTCTGCAGAGCTCTCCAAGTTGGCAGCAAATGCCTTTCTAGCCCAAAGGATTTCATCTGTGAATGCCATGTCTGCTCTCTGTGAAGCCACTGGGGCCAACATTTCCGAGGTCGCACATGCTGTGGGCAAAGACTCAAGGATTGGTCCACGTTTCTTGAATGCCAGTGTTGGTTTCGGTGGATCCTGCTTCCAGAAGGACATTCTGAATTTGGTGTACATTTGTGAATGCAATGGACTTCAAGAGGTTTCCAATTACTGGAAACGTGTAGTCAAGATCAACGACTATCAAAAGTCTAGATTCGTCAATCGCGTGGTTTCGTCCATGTTTAACACGGTCTCTGGAAAGAAGATTGCCATTCTCGGATTTGCCTTCAAGAAAGATACAGGGGACACTAGAGAAACCCCTGCCATTGATGTTTGCAAGGGACTTCTGGGGGACAAGGCCATTCTCAGCATCTATGATCCTCAAGTCACAGAGGATCAGATTCAAAGAGATCTTTCCATGAATAAATTTGATTGGGACCATCCTGCTCATCTGCAGCCCACGAGCCCTTCTGCGATCAAGCAAGTGACCGTTGTGTGGGATGCTTACGAAGCAGCCAAAGATGCTCATGGGGTTTGTATTGTTACAGAGTGGGATGAATTCAGGAATTTGGATTATCAGAGAATCTATGACAACATGCAGAAGCCCGCATTCATTTTTGATGGTCGCAACATTGTCAATGTGGACCGGCTTTGGCTGATTGGTTTCATTGTTTATTCAATTGGCAAGCCTCTAGACCCTTGGGTTAAGGATTTGCCTATATCAGCATAG___CTCGGCCCATTATTTGCCAGATGGAGCAGTAGATGAAGGGTTCTCGGAATATTTTGGTCGGTTCATGCAAATTGAGAGTATTTTCTGTCATTAGGCTCTGGTAATATATAGGATATAATATTTAAATTACTAGAATTGTAGAGGGATTTTTGAATTTGTCCAACTTTTCAGAGTGGATGCTGAAACTCCTGCTTCTCGGAATTTTATATTGTATTAGAAGGATTCTTTTCTGCTGAATAACATTGGAATGTCATGTATTTGCTTCTTTCTGTTATGATATTGCGCTGTATTATCCTGAACCtGTCTGAATCGATTTGGAAATGAACTCATTAGTCTGCC

Fln Alignment:

sp_v1.1_unigene20462___MVKVCCIGAGYVGGPTMAVIALKCPAIEVVVVDISEPRIDAWNSDQLPIYEPGLDEVVKACRGKNLFFSSDVEKHVAEADIVFVSVNTPTKTRGLGHGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAINDLLKPDRVLIGGRETPEGKKAVEALKAVYANWVPRDNIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANISEVAHAVGKDSRIGPRFLNASVGFGGSCFQKDILNLVYICECNGLQEVSNYWKRVVKINDYQKSRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAILSIYDPQVTEDQIQRDLSMNKFDWDHPAHLQPTSPSAIKQVTVVWDAYEAAKDAHGVCIVTEWDEFRNLDYQRIYDNMQKPAFIFDGRNIVNVDRLWLIGFIVYSIGKPLDPWVKDLPISA
B8LQ50_______________MVKICCLGAGYVGGPTMAIIALKCPAIEVVVVDISSARIAAWNSDQLPIYEPGLDEVVKSCRGKNLFFSSDVEKHVLEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSRSDKIVVEKSTVPVKTAEAIEKILTHNTKGINFQILSNPEFLAEGTAIQDLLNPDRVLIGGRETPEGQKAVEALKAVYANWVPEDRIIATNLWSAELSKLAANAVLAQRISSVNAMSALCEATGADVTEVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLVEVANYWKGVIKINDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKANISIYDPQVTEDQIQRDLSMNKFDWDHPPHLQPMSPSAIKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQKIHDNMQKPAFIFDGRNIVDVEKLRKIGFIVYSIGKPLDSWVKDLPAAA

SNPs (tot: 57)

Position	A %	C %	G %	T %	Probability
1231			20	80	0.995493
1232	20			80	0.995493
1233			20	80	0.995493
1235			20	80	0.995493
1236	20	80			0.995493
1238	20	80			0.995493
1239			20	80	0.995493
1240		20		80	0.995493
1243	40		60		1.0
1249	20			80	0.995493
1251	20			80	0.995493
1339	75			25	0.996473
1386	83		16		0.994512
1446	85		14		0.993533
1654		50		50	1.0
1686		50		50	1.0
1779	87			12	0.992554
1783	12	87			0.992554
1784			12	87	0.992554
1785		12		87	0.992554
1788	12	87			0.992554
1789		87	12		0.992554
1790	87		12		0.992554
1793	12			87	0.992554
1794		12		87	0.992554
1798		12		87	0.992554
1799			12	87	0.992554
1805			71	28	1.0
1810	20			80	0.995493
1814		20		80	0.995493
1815	20			80	0.995493
1823	20	60	20		0.99255
1825		20		80	0.995493
1826	20			80	0.995493
1827	20	80			0.995493
1829		80		20	0.995493
1832		20	80		0.995493
1834	80		20		0.995493
1835	80			20	0.995493
1836	20	80			0.995493
1838		80		20	0.995493
1841	80	20			0.995493
1844	80		20		0.995493
1846		80	20		0.995493
1847	80			20	0.995493
1860	75	25			0.996473
1861	75	25			0.996473
1863	75	25			0.996473
1865	75			25	0.996473
1906			66	33	0.997452
1907	66		33		0.997452
1913	33			66	0.997452
1921			33	66	0.997452
1922		66	33		0.997452
1927	66		33		0.997452
1929	66	33			0.997452
1930			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain