SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20409

Length: 274 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene20409
CGTCGTGACCTTGGCTGTCACTCAGTTTGCAGTTCATAGACATAATGTAGGGAGTCCAGCCCATCCAAAGTACATAAATCTGTCCACTCGCTTGTCTATTGCCCAAAGTTCCGAGTATTGCACCCTGATGAAACAATTTGCTAATATTTTTGCTTGGGAGTACAATGATCTTAAGACCTATGACACAAACATCATTTAGCATAAGATTCCACTGGAAAAGAACACCATCCCTTTTAAGTAGAAATTAAGACCTATCAGCCCTCTCTTATTGCCC

Ace file of the UniGene sp_v1.1_unigene20409

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase family protein n=1 Tax=Asparagus officinalis RepID=Q2AA00_ASPOF	-	-	2.0e-05	28%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	33%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5BLW2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 37 aas, your sequence is shorter than subject: 80 - 579

Fln protein: VVTLAVTQFAVHRHNVGSPAHPKYINLSTRLSIAQSSEYCTLMKQFANIFAWEYNDLKTYDTNII*HKIPLEKNTIPFK*

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGCAGTTCATAGACATAATGTAGGGAGTCCAGCCCATCCAAAGTACATAAATCTGTCCACTCGCTTGTCTATTGCCCAAAGTTCCGAGTATTGCACCCTGATGAAACAATTTGCTAATATTTTTGCTTGGGAGTACAATGATCTTAAGACCTATGACACAAACATCATTTAGCATAAGATTCCACTGGAAAAGAACACCATCCCTTTTAAGTAGAAATTAAGACCTATCAGCCCTCTCTTATTGCCC

Fln Alignment:

sp_v1.1_unigene20409___GSPAHPKYINLSTRLSIAQSSEYCTLMKQFANIFAWEYNDLKTYDTNII*HKIPLEKNTIPFK*KLRPISP
A5BLW2_______________GAPNQPKEIRIGSSLSPDERSRLIDLLRSYLDAFAWSYEDMPSLDPSIVQHHLPILPHARPVKQKLRRLHP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain