SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20396

Length: 344 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene20396
CGTCGTGACCTTGGCTGTCACTCAACACTTGCCAACTACATGCACCTCAAAAATGGCTCCTGCAAGTTTGTGTTTCTTTCCACAATATCTCTTACCGTTGATCAAGACACCACTTTTCGTTGTCAATTCTGCATATGATCCATTGCAGATTGGGAATATTTTGGTTCCCATTAAAGCAGATCCCAAAAATAATTGGCAGAAGTGCAAGATGAAGATCACAGCTTGCTCTCCATGGCAATTGAAAATAATGGAAGGGTTTAGAAATAATATGGTGCGTGCATTAACACCGAGCTTGTCTAATCCAAGTGCTAGAGGGCTATTTATCAACTCATGCTATGCACACT

Ace file of the UniGene sp_v1.1_unigene20396

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative pectinacetylesterase protein n=2 Tax=Arabidopsis RepID=Q940J8_ARATH	-	-	5.0e-27	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	pectinacetylesterase protein	-	-	5.58968e-36	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	5.58968e-36	69%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	5.58968e-36	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pectinacetylesterase	IPR004963	-	5.58968e-36	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACV4

Fln msg: Distance to subject end: 53 aas, your sequence is shorter than subject: 114 - 411

Fln protein: VVTLAVTQHLPTTCTSKMAPASLCFFPQYLLPLIKTPLFVVNSAYDPLQIGNILVPIKADPKNNWQKCKMKITACSPWQLKIMEGFRNNMVRALTPSLSNPSARGLFINSCYAH

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACACTTGCCAACTACATGCACCTCAAAAATGGCTCCTGCAAGTTTGTGTTTCTTTCCACAATATCTCTTACCGTTGATCAAGACACCACTTTTCGTTGTCAATTCTGCATATGATCCATTGCAGATTGGGAATATTTTGGTTCCCATTAAAGCAGATCCCAAAAATAATTGGCAGAAGTGCAAGATGAAGATCACAGCTTGCTCTCCATGGCAATTGAAAATAATGGAAGGGTTTAGAAATAATATGGTGCGTGCATTAACACCGAGCTTGTCTAATCCAAGTGCTAGAGGGCTATTTATCAACTCATGCTATGCACACT

Fln Alignment:

sp_v1.1_unigene20396___TQHLPTTCTSKMAPASLCFFPQYLLPLIKTPLFVVNSAYDPLQIGNILVPIKADPKNNWQKCKMKITACSPWQLKIMEGFRNNMVRALTPSLSNPSARGLFINSCYAH
D5ACV4_______________SKHLPVACTSEMIPSSLCFFPQYLLQWIRTPLLVVNSAYDPLQIRFILVPAAADPNNYWRNCKMNITRCAPWQLRVMEEFTDYMISALTP-VSNSRTGGLFINSCYAH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain