SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20335

Length: 2271 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20335
CGTCGTGACCTTGGCTGTCACTCAGTACGTTTATCTTGGTTGTATGGCATTAAAGATGCTTCTCTATGTTTCCAATATCGAAATAAAATAAAAATAATATAATGTTTTTTCTCGATTGTAACATTTGGGCGTCCCTGGCCTCCTAAGACTATATAAGCCTTACCAGAAGCTAATGGTTTCAGCTGAGAGGGTGGTCTAAGAGCATATAGTTTGTTTTTAAGTGGTGGTTTTTTCTGGATATTTTTCCTGAATAGTAGCGGTTTCGATTGCTGGGGAAGGCAGCAGCAGCTGGTTTGAAAGTTGCAGCAGCGGTTTTGGAAACAAAACAATGTGTGGAGGTTCCGTTATCTCGGATTACATTCCCAATCAATCTCGGCGTGTAACTCCTAGGGAGCTATGGCCGGATTTCGACACGTTCGCTGAATTCATCAATGGCGGAGGAGTGCAGGAAACCTTCAATAAACCTCGCAAGTTGGACGAGGGATGCAAGCAGAAGAGTAATCCCAGCAAGGGCTTTGTCAAGACCCAGCAGGAATTTTCTTCCGGGTTTGAAGGTGAGAGAAGCGAGGTGATTCCTCCTTTGGAAGATGTGGAAGGGTCCGTACCCACAATTGCTGGGCGGAAGAGAAAGAGCGTATACAGAGGTATCAGACAGCGTCCATGGGGAAAATGGGCTGCGGAGATTAGAGATCCCAGGAAGGGGGTTAGAGTTTGGCTTGGAACGTTCAACACGGCAGTGGAGGCCGCCAGGGCCTATGATGCAGCGGCTAAAAGGATCCGAGGTAAGAAAGCTAAGCTAAATTTTCCTGATAACTCGTATTCTGTTAAAAAAGACACTAGCAAGAAAGTGTCAGGAAAGAAATGGAAGTTGTGCTCAAAACACCCTGCTTTGCTGTTAGAGGGTTTTAATGCAAGCTGTAAGGTAAAACCCTCATATTCAGCAAATCCTGATTTATTAGAGGGTTACAATATAAACAGGAAAGTAAAAGCCTCTTTGAATGGTGTTGGCAAATCTAATCTTGCAATCTGTGGATACGATGATATGGAATACGGTGACTCCGAGTTCTCAAAACCCAGTGCCCCATTTCAAAACAATTCAAATGCATGCACAGTCCAATTTTCTGAGCATAGCAATTTAAACCAAACTTCGCAGAAATCGTGCTCTTGTGAGATCTGTAGTCACAATTACTCAGAGATGAGCAATGTAATGCCTCCTGCTTATGGCAATGCCGTAAATTTTGAACCAGTGCAAACTTCCAATCCAGGAGGTTATTTTGATTCTGATCATAGCAGCATGTCATTTGAAGGGGCGCATTTCCCATGGGCTCAAGAAATAAAAACCCCAGAAGTTTCTTCTATATGTGAAGACGGAAATGAGTCTGCCTTTGTGGACATTAAGCCGGTCGATGATGTTGTTAAGGCCAAACCTGTGGATACCCCTATTGAGGTCGATGGTGGGACAGACGATTGTTACAAAACAGAGGATGGCGCCGGGCAGTTTGACAAACAGTTGTCTGCTCTGGAATCATATCTTGGGTTGTCTGAGTATTCTATTGCTAAAGCAAATCTGTGTATAGAAGATGCAGGTCGCTCTGCGGGCTCTTTTCCAGATGAGCAGTGTTTCCTGGAACAATGGATCTTGGAAGATCTGCCAAATTCAGGTTTACGTTATCCAAGTAGTCTTGGTTCTCGCATCTGAGGCTTACTATAAATACGTAACAAGCAAACAGACTGGTGGTTTCAGTTTTGATGTTGCAGGCCTATGTCTAGCCTGTACAGTCTTTTAAACTCGTTTAGTACTTTTTTTGTTTTCTATTGTGAAGCCTCTTCGAAGGTTGAAGACAGGATACTAGAATTAATATGTAGTAATTGGTTCTCAAACATTGGGTACTCGGTCCTTAGTATTATGAAGTTGCAGAGAAGACTGAAGAATCTCTGAAGATTTTTATGAAGACGTTATTTTTCTCATAGACTGTGAAGAATCTCTGAAGATTTTTATGAAGATGCTATTTTTCCCATATAACTACTAATCTAGTAGCTTGATGTAGGCAAGAATGCCTTGGCAGGAGGGCTCCAATACAATGGAAATCCTTCTATCTGGTTTGGACACAATTTGTAGCATATCTGAAAGATTCTTTATGGTGTTATTACTTCTGTACCTGCATATATTCTCATTCGTTAAAGAGATATGGGCAAAAGTCATGTACATATAACATGGATGTATGTCAATTAAATTTTTTGTTAGACTCAAATGAGATGAGCACTTTTATC

Ace file of the UniGene sp_v1.1_unigene20335

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ethylene responsive protein n=1 Tax=Glycine max RepID=Q7XAU4_SOYBN	-	-	9.0e-25	29%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	34%
Blast2go	ap2 erf domain-containing transcription factor	-	-	1.61544e-24	55%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AP2/ERF domain	IPR001471	-	1.61544e-24	55%
Blast2go	DNA-binding, integrase-type	IPR016177	-	1.61544e-24	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWS1

Fln msg: your sequence is longer than subject: 457 - 419

Fln protein: MCGGSVISDYIPNQSRRVTPRELWPDFDTFAEFINGGGVQETFNKPRKLDEGCKQKSNPSKGFVKTQQEFSSGFEGERSEVIPPLEDVEGSVPTIAGRKRKSVYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAVEAARAYDAAAKRIRGKKAKLNFPDNSYSVKKDTSKKVSGKKWKLCSKHPALLLEGFNASCKVKPSYSANPDLLEGYNINRKVKASLNGVGKSNLAICGYDDMEYGDSEFSKPSAPFQNNSNACTVQFSEHSNLNQTSQKSCSCEICSHNYSEMSNVMPPAYGNAVNFEPVQTSNPGGYFDSDHSSMSFEGAHFPWAQEIKTPEVSSICEDGNESAFVDIKPVDDVVKAKPVDTPIEVDGGTDDCYKTEDGAGQFDKQLSALESYLGLSEYSIAKANLCIEDAGRSAGSFPDEQCFLEQWILEDLPNSGLRYPSSLGSRI*

Protein Length: 458

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTACGTTTATCTTGGTTGTATGGCATTAAAGATGCTTCTCTATGTTTCCAATATCGAAATAAAATAAAAATAATATAATGTTTTTTCTCGATTGTAACATTTGGGCGTCCCTGGCCTCCTAAGACTATATAAGCCTTACCAGAAGCTAATGGTTTCAGCTGAGAGGGTGGTCTAAGAGCATATAGTTTGTTTTTAAGTGGTGGTTTTTTCTGGATATTTTTCCTGAATAGTAGCGGTTTCGATTGCTGGGGAAGGCAGCAGCAGCTGGTTTGAAAGTTGCAGCAGCGGTTTTGGAAACAAAACA_-_ATGTGTGGAGGTTCCGTTATCTCGGATTACATTCCCAATCAATCTCGGCGTGTAACTCCTAGGGAGCTATGGCCGGATTTCGACACGTTCGCTGAATTCATCAATGGCGGAGGAGTGCAGGAAACCTTCAATAAACCTCGCAAGTTGGACGAGGGATGCAAGCAGAAGAGTAATCCCAGCAAGGGCTTTGTCAAGACCCAGCAGGAATTTTCTTCCGGGTTTGAAGGTGAGAGAAGCGAGGTGATTCCTCCTTTGGAAGATGTGGAAGGGTCCGTACCCACAATTGCTGGGCGGAAGAGAAAGAGCGTATACAGAGGTATCAGACAGCGTCCATGGGGAAAATGGGCTGCGGAGATTAGAGATCCCAGGAAGGGGGTTAGAGTTTGGCTTGGAACGTTCAACACGGCAGTGGAGGCCGCCAGGGCCTATGATGCAGCGGCTAAAAGGATCCGAGGTAAGAAAGCTAAGCTAAATTTTCCTGATAACTCGTATTCTGTTAAAAAAGACACTAGCAAGAAAGTGTCAGGAAAGAAATGGAAGTTGTGCTCAAAACACCCTGCTTTGCTGTTAGAGGGTTTTAATGCAAGCTGTAAGGTAAAACCCTCATATTCAGCAAATCCTGATTTATTAGAGGGTTACAATATAAACAGGAAAGTAAAAGCCTCTTTGAATGGTGTTGGCAAATCTAATCTTGCAATCTGTGGATACGATGATATGGAATACGGTGACTCCGAGTTCTCAAAACCCAGTGCCCCATTTCAAAACAATTCAAATGCATGCACAGTCCAATTTTCTGAGCATAGCAATTTAAACCAAACTTCGCAGAAATCGTGCTCTTGTGAGATCTGTAGTCACAATTACTCAGAGATGAGCAATGTAATGCCTCCTGCTTATGGCAATGCCGTAAATTTTGAACCAGTGCAAACTTCCAATCCAGGAGGTTATTTTGATTCTGATCATAGCAGCATGTCATTTGAAGGGGCGCATTTCCCATGGGCTCAAGAAATAAAAACCCCAGAAGTTTCTTCTATATGTGAAGACGGAAATGAGTCTGCCTTTGTGGACATTAAGCCGGTCGATGATGTTGTTAAGGCCAAACCTGTGGATACCCCTATTGAGGTCGATGGTGGGACAGACGATTGTTACAAAACAGAGGATGGCGCCGGGCAGTTTGACAAACAGTTGTCTGCTCTGGAATCATATCTTGGGTTGTCTGAGTATTCTATTGCTAAAGCAAATCTGTGTATAGAAGATGCAGGTCGCTCTGCGGGCTCTTTTCCAGATGAGCAGTGTTTCCTGGAACAATGGATCTTGGAAGATCTGCCAAATTCAGGTTTACGTTATCCAAGTAGTCTTGGTTCTCGCATCTGA___GGCTTACTATAAATACGTAACAAGCAAACAGACTGGTGGTTTCAGTTTTGATGTTGCAGGCCTATGTCTAGCCTGTACAGTCTTTTAAACTCGTTTAGTACTTTTTTTGTTTTCTATTGTGAAGCCTCTTCGAAGGTTGAAGACAGGATACTAGAATTAATATGTAGTAATTGGTTCTCAAACATTGGGTACTCGGTCCTTAGTATTATGAAGTTGCAGAGAAGACTGAAGAATCTCTGAAGATTTTTATGAAGACGTTATTTTTCTCATAGACTGTGAAGAATCTCTGAAGATTTTTATGAAGATGCTATTTTTCCCATATAACTACTAATCTAGTAGCTTGATGTAGGCAAGAATGCCTTGGCAGGAGGGCTCCAATACAATGGAAATCCTTCTATCTGGTTTGGACACAATTTGTAGCATATCTGAAAGATTCTTTATGGTGTTATTACTTCTGTACCTGCATATATTCTCATTCGTTAAAGAGATATGGGCAAAAGTCATGTACATATAACATGGATGTATGTCAATTAAATTTTTTGTTAGACTCAAATGAGATGAGCACTTTTATC

Fln Alignment:

sp_v1.1_unigene20335___MCGGSVISDYI---PNQSRRVTPRELWPDFDTFAEFINGGGVQETFNKPRKLDEGCKQKSNPSKGFVKTQQXXXXXXXXXXXXVIPPLEDVEGSVPTIAGRKRKSVYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTXXXXXXXXXXXXXXXXXXXXXLNFPDNXXXXXXXXXXXXXXXXXXXXXXHPALLLEGFNASCKVKPSYSANPDLLEGYNINRKVKASLNGVGKSNLAICGYDDMEYGDSEFSKPSAPFQNNSNACTVQFSEHSNLNQTSQKSC-----SCEICSHNYSEMSNVMPPAYGNAVNFEPVQTSNPG---GYFDSDHSSMSFEGAHFPWAQEIKTPEVSSICEDGNESAFXXXXXXXXXXXXXXXXXXIEV-----DGGTDDCYKTEDGAG------------QFDKQLSALESYLGLSEYSIAKANL--CIEDAGRSAGSFPDEQCFLEQWILEDLPNSGLRY
A9NWS1_______________MCGGAIISDFIIPPANRGRRVTARDIWPDFDKFSEFINGGAPVETFDVSVNVDDDDEDFDDDDF-----------------------LDFDESYQNKSAGRKRKNLYRGIRQRPWGKWAAEIRDPRKGARVWLGTFNTAEEAARAYDAAARKIRGKKAKVNFVDEPPPIKKETNNGKGSRK---------------ESSKKIKSCTTPKADHFQGFKMANPSNTHLNFNQKSPNP--SFDDLGFLNSESQLHS--------ICNRNFA-------TKQSSCALPAYSTDFSDFDESEVENLVP----QPASFEPMKNIHKRKGFDYFDSDTSSVSVDRSHFSWIPEVKTPEISSVPKAEAESNQCNFADISTPVATSVSVGSPEVVLSPFNNGLNKSPSVEDVASEKSPKLEESSQLEISEDLPSLESYPWLFQLPYFEGNLDQSLQGVGIGEASFPDGENALQLWNFDAVPISDSAY

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
389	88		11		0.923564
811	13			86	0.999973
957		12		87	0.992554
1052	14		85		0.999981
2231		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain