SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20278

Length: 1727 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20278

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peptidyl-prolyl cis-trans isomerase, putative	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	peptidyl-prolyl cis-trans isomerase	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	82%
Blast2go	catalytic activity	GO:0003824	Molecular Function	82%
Blast2go	chloroplast thylakoid lumen	GO:0009543	Cellular Component	82%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	82%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PsbQ-like domain	IPR023222	-	0.0	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLE8

Fln msg:

Fln protein: MAAPICCNYYSIGPSASASSSTCAPIAPSFHVLPNDSNKRLPKWKCRLLDLVSRRGPGKCTSTSGAHGISIRCSRASAEEPKSKGFSLRECSFCIALAATIVTMQPSVEAASAFQPVPVLPDLSVLISGPPIKDPKALLRYALPIDNKPIREVQKSLEDITENLKVPGERALEPVARNIRQASRILSQNKQAILAGVAESKKEHGQELMDKLTVGLEDFQKIVEERERDAIAPKQQQLLEFVGG*DLPGTLDFCSVEEDMVDGFPFEVPEEYSSMPTLKGRATVEMKVKVKNNPNVEDVTFRLVLDGYNAPITAGNIADLVERHFYDGMEIQRADGFVVQTGDPEGPADGFVDPSTEKVRTIPLEIMVDGDKSPVYGATLEELGRYKARTKLPFNAFGTMAMARDEFDANSASSQIFWLLKESELTPSDANILDGRYAVFGYVTENKDYLADLKVGDVIESAHVVSGIDNLVNPSYKIAA*

Protein Length: 482

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTTTGAATCATCTCCAGCCCTTAGAAGCATATCCCATTGAAGTAGTACTTTCTTTCACTCGGGGTACCCTTTCCTTCTACTCTTCCTGCTATCAGTTGTGAAAGGGCACTCTCGTATCTTACCTTCCTTATCACTG_-_ATGGCAGCGCCCATCTGCTGCAACTACTATTCTATAGGCCCATCTGCTTCTGCATCCTCGTCCACATGTGCTCCCATTGCTCCAAGCTTTCATGTACTGCCCAATGACTCGAACAAGAGATTACCCAAATGGAAATGCAGGTTATTGGATTTGGTCAGCAGACGAGGTCCAGGCAAATGTACTTCCACTTCTGGGGCTCATGGCATCTCTATTAGGTGCTCCAGAGCTTCAGCAGAAGAACCCAAGAGCAAAGGATTTTCTTTGAGAGAGTGTAGCTTCTGTATTGCATTGGCAGCAACAATTGTGACAATGCAGCCCTCTGTTGAAGCTGCTTCTGCATTTCAACCTGTACCTGTATTACCTGATCTCTCTGTATTGATCTCAGGCCCTCCAATCAAAGATCCCAAAGCATTGCTGAGGTATGCTCTTCCTATTGACAATAAACCCATCAGAGAGGTCCAGAAGTCCCTTGAAGACATCACAGAGAATCTTAAGGTTCCGGGAGAGAGGGCACTGGAGCCTGTGGCGAGGAACATAAGGCAAGCTTCTCGCATCCTCAGCCAGAATAAGCAAGCCATCCTTGCAGGTGTTGCTGAATCAAAGAAAGAGCATGGCCAGGAATTGATGGACAAGCTCACTGTTGGCCTAGAAGACTTTCAGAAGATTGTGGAAGAAAGGGAGAGAGATGCAATTGCACCAAAACAACAACAGCTGCTTGAATTTGTAGGAGGCTGAGATCTTCCTGGGACATTGGATTTCTGCAGTGTTGAAGAAGATATGGTGGACGGGTTTCCTTTTGAAGTGCCTGAAGAATACTCGAGTATGCCTACTTTAAAGGGGAGGGCAACCGTGGAAATGAAAGTGAAGGTTAAAAACAATCCTAATGTTGAAGATGTCACATTTCGGCTGGTTCTGGATGGCTACAATGCCCCCATTACTGCAGGAAATATTGCAGACCTAGTGGAAAGACACTTCTATGATGGGATGGAAATTCAAAGAGCTGATGGATTTGTTGTGCAAACGGGTGATCCTGAAGGACCAGCAGATGGATTTGTGGACCCCAGTACAGAAAAAGTACGTACCATCCCACTAGAAATAATGGTGGATGGAGACAAATCACCTGTCTACGGTGCTACTCTAGAGGAGCTTGGCCGTTACAAAGCTCGGACAAAGCTCCCATTCAATGCTTTTGGTACCATGGCAATGGCCCGAGATGAATTTGATGCTAACTCTGCTTCAAGCCAAATATTTTGGCTTCTTAAAGAAAGTGAACTCACACCTAGTGATGCCAATATCTTGGATGGAAGATATGCAGTGTTTGGATATGTAACTGAAAACAAGGATTATCTTGCAGACTTAAAAGTTGGAGATGTGATTGAGTCAGCGCATGTTGTCTCTGGCATTGATAATCTCGTCAATCCAAGCTATAAGATTGCAGCCTAA___TTTGAGGATAACAATCTCTTTTTTTCATTTTTGAAATTTTGAGGAATACCGGCAAATTACACTTCATTGTTCATTTACTCTACATAAGTTGATTTAATTGATTCTTTTGTGCATCTACACC

Fln Alignment:

sp_v1.1_unigene20278___MAAPICCNYYXXXXXXXXXXXXXXXXXXXFHVLPNDSNKRLPKWKCRLLDLVSRRGPGKCTSTSGAHGISIRCSRASAEEPKSKGFSLRECSFCIALAATIVTMQPSVEAASAFQPVPVLPDLSVLISGPPIKDPKALLRYALPIDNKPIREVQKSLEDITENLKVPGERALEPVARNIRQASRILSQNKQAILAGVAESKKEHGQELMDKLTVGLEDFQKIVEERERDAIAPKQQQLLEFVGG*DLPGTLDFCSVEEDMVDGFPFEVPEEYSSMPTLKGRATVEMKVKVKNNPNVEDVTFRLVLDGYNAPITAGNIADLVERHFYDGMEIQRADGFVVQTGDPEGPADGFVDPSTEKVRTIPLEIMVDGDKSPVYGATLEELGRYKARTKLPFNAFGTMAMARDEFDANSASSQIFWLLKESELTPSDANILDGRYAVFGYVTENKDYLADLKVGDVIESAHVVSGIDNLVNPSYKIAA
B8LLE8_______________MAAPVCCNYYSICPSAAPSASTCAPITPSLHVLSNDTNKRLPKWKCRLLDLMGRRGPGKCTSTPGAHGISIRCSRASAEEPKSKGFSLRECTLCIALAATIVTMQPSVEAASAFQPVPVLPDLSVLISGPPIKDPKALLRYALPIDNKPIREVQKSLEDITENLKVPGERALDPVARNLRQASRILSQNKQAILAGVAESKKEHGQELMDKLTVGLEEFQKIVEERERDAIAPKQQQLLDFVGG-----------VEEDMVDGFPIEVPEEYSSKPILKGRATVEMKVKVKNNPNFEDVTFLLVLDGYNTPITAGNFADLVERHFYDGMEIQRADGFVVQTGDPEGPADGFVDPSTEKVRTIPLEIMVDGDKSPVYGATLEELGLYKARTKLPFNAFGTMAMARDEFDANSASSQIFWLLKESELTPSNANILDGRYAVFGYVTENQDYLADLKVGDVIESAHVVSGIDNLVNPSYKIAA

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
155	12	87			0.992554
157			12	87	0.992554
158	87		12		0.992554
159			12	87	0.992554
160		87	12		0.992554
512		75	25		0.996473
514			75	25	0.996473
1204	88	11			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain