SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20243

Length: 2452 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20243
CGTCGTGACCTTGGCTGTCACTCAATCACTTCTTTGACCCTCCTCGTTTTGGTTTCAACCGGTATCGAAATGTACCAGCCAATCTGAGCTCTTACGCCTCTTGGATCTCCATGCCGAAGTCTTCTAGTGGACTTCTGAACACAGCATGAGAAACCCATTTGCCCGTTTTCTCTGTAATGCGTAGTTTCCCCTTTGAATGGTGGTGTCTATCAATCCAAACCCTCCACGCGGTTTCCGTTACAGTTGCTCTGATGTGAGGGGCTATGGTCTTGTTTTCGTCTGCAGAATGGGCTTGGCAAGGGTCTCCGAAGGGTTCTGCTACGCCATCTAGAATCTATAACACAGCCCAGTTGGTTTTCAAATGCAAACGGAGTCCCTAGGGTTCGATCTGTGCAATATTTGCTGCTGCGATGTCGCGGCGCAGAGGCTTCTTTTGACGCTGTTGTTTGCTGCGAAGGGAGAATAGTTATCTTTGACCTTCTTGAATATGGAGGGGAAAAGGATCGCAGCAAGCCCTCGACCTTGCAGTGGCCGGCGCATCGTCGCTGCCAAACGTCAACGGGTGGACGCTTCTGCTAACTGCGTGCGTAAGCTGCAAAGGCGGGAGATCGGCACCAGTGGCAACAGGGCTTTCAACATCACTAATTCCCAGGAAAAGTTTCGGAATTTTCAGTTGCAGGAGGAATTTGACACTTATGATCCCAAGGCACATTGGTTTTTGAAGCTGCAGTTCCTGAAGAAGAGGTCGAAAATCATAGAAATTGTTGCAGCACGTGATATTGTATTTGCTTTGGCTCAATCTGGTGTTTGTGCAGCTTTTAGCAGGGAGGCCAATAAGAAAATATGCTACCTGAATATAAGCCCGGATGAAGTGATACGCAGCCTCTTTTATAATAAGAACAATGATTCTCTAATCACAGTGTCAGTATATGCCTCGGATAATTTCAGTTCACTGAAATGCAGAACAACACCCATTGAGTATATCCGGAGGGGTCAACCAGATGCAGGCTTTGCCTTATTCGAGTCCGAGTCATTGAAATGGCCTGGTTTTGTAGAGTTTGATGATGTGAACGGAAAAGTTCTCACCTACTCTGCCCAGGATGGCATCTATAAGGTGTTCGACTTAAAGAACTACACATTATTGTATTCAATATCAGATGAACATGTTCAAGAGATAAAGATCAGCCCAGGGATAATGTTACTAATATTCGACAGGGCCAGTGGGCATGTTCCGTTAAAAATTCTATCTATAGAGGATGGCACTGTTTTAAAAGCATTTAATCACCTATTGCATCGCAATAAGAAGGTTGACTTTATTGAGCAGTTCAATGAGAAACTTCTCGTAAAACAAGAAAATGAGAACCTACAAATACTGGATGTTCGCAATACGCAATTGACTGAAGTAAGCAGGGCAGAGTTCTTGACTCCATCGGCATTTATCTTTCTATATGAGAATCAGTTATTCCTGACATTCCGCAATCGTACAGTGGCTGTATGGAATTTCAGAGGGGAGCTGGTTACCTCATTTGAGGACCACTTGCTATGGCATCCTGATTGCAATACAAATAACATTTATATTACTAGTGATCAAGATTTGATTATTTCTTACTGCAAGGCACTTCCTCTTTCTTCTGGAGCAGAAGAAAATGTTGGTTCTATAAATATAAGCAACATATTAACTGGAAAGTGCCTGGCGAAGATTCGTGCGAATGATCCAAATGTTCAGATTAGTCCTAGAAATCGCCCAAATGCCTCTACAATCAGAAGTACTGTAGAAGAAGCACTTGAAGACATCACTGCCTTATTCTACGATGAAGAGCGGAATGAAATATATACTGGCAATTGGCATGGCTTGGTTCATGTCTGGTCTAACTGATTAATGTCTGTATGTTGTGCATACCCAGTCAATCATTCACTGGATTTTATGTCGAAATCTCAAGCACTGGGGCCTGACAGTGTTGCTAATTGTTCGAGTGTTTGGATTATGCTTCTTGATAGCAAGAAATATGGAAATTTAAGATGCTTGATTAACAGTGATATAGAAAGGAGCTCGTGGCAACATAATTCAAATTATGAAAGTTTTGATTCTTCAAATGTACACGCCAAGTGTGTTTGATAGGTCAGTTGTCTGATAATATGACTCAGTGGGCAGGTGCTCAAATTGCAGAAAGTTGCGATTGATACAGTAGATAGTTTAGTCTCCTGTAAATCTGTATTCTGAATTGTAATTGACCCTTACCATGGAAGGGTCTCTAATTTAATATTTTCTTTATTTTTTGTAGAAGACCTGTTTTCTCATGTGTTTTTAAAGCTCTGCAGAACGTTGGAATCAAGATCTAAGGATCGTAAATTTTATAAAAGGCAAAAGCTTAATCTCTGCAATGCTCAAGAGACATGCAATTGAAATACTTACCTTTATCCTACAAGTGTGTAAAATGAATATATTATCACC

Ace file of the UniGene sp_v1.1_unigene20243

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	protein	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8E8

Fln msg: your sequence is longer than subject: 463 - 264

Fln protein: MEGKRIAASPRPCSGRRIVAAKRQRVDASANCVRKLQRREIGTSGNRAFNITNSQEKFRNFQLQEEFDTYDPKAHWFLKLQFLKKRSKIIEIVAARDIVFALAQSGVCAAFSREANKKICYLNISPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTPIEYIRRGQPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDGIYKVFDLKNYTLLYSISDEHVQEIKISPGIMLLIFDRASGHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNTQLTEVSRAEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKALPLSSGAEENVGSINISNILTGKCLAKIRANDPNVQISPRNRPNASTIRSTVEEALEDITALFYDEERNEIYTGNWHGLVHVWSN*

Protein Length: 464

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCACTTCTTTGACCCTCCTCGTTTTGGTTTCAACCGGTATCGAAATGTACCAGCCAATCTGAGCTCTTACGCCTCTTGGATCTCCATGCCGAAGTCTTCTAGTGGACTTCTGAACACAGCATGAGAAACCCATTTGCCCGTTTTCTCTGTAATGCGTAGTTTCCCCTTTGAATGGTGGTGTCTATCAATCCAAACCCTCCACGCGGTTTCCGTTACAGTTGCTCTGATGTGAGGGGCTATGGTCTTGTTTTCGTCTGCAGAATGGGCTTGGCAAGGGTCTCCGAAGGGTTCTGCTACGCCATCTAGAATCTATAACACAGCCCAGTTGGTTTTCAAATGCAAACGGAGTCCCTAGGGTTCGATCTGTGCAATATTTGCTGCTGCGATGTCGCGGCGCAGAGGCTTCTTTTGACGCTGTTGTTTGCTGCGAAGGGAGAATAGTTATCTTTGACCTTCTTGAAT_-_ATGGAGGGGAAAAGGATCGCAGCAAGCCCTCGACCTTGCAGTGGCCGGCGCATCGTCGCTGCCAAACGTCAACGGGTGGACGCTTCTGCTAACTGCGTGCGTAAGCTGCAAAGGCGGGAGATCGGCACCAGTGGCAACAGGGCTTTCAACATCACTAATTCCCAGGAAAAGTTTCGGAATTTTCAGTTGCAGGAGGAATTTGACACTTATGATCCCAAGGCACATTGGTTTTTGAAGCTGCAGTTCCTGAAGAAGAGGTCGAAAATCATAGAAATTGTTGCAGCACGTGATATTGTATTTGCTTTGGCTCAATCTGGTGTTTGTGCAGCTTTTAGCAGGGAGGCCAATAAGAAAATATGCTACCTGAATATAAGCCCGGATGAAGTGATACGCAGCCTCTTTTATAATAAGAACAATGATTCTCTAATCACAGTGTCAGTATATGCCTCGGATAATTTCAGTTCACTGAAATGCAGAACAACACCCATTGAGTATATCCGGAGGGGTCAACCAGATGCAGGCTTTGCCTTATTCGAGTCCGAGTCATTGAAATGGCCTGGTTTTGTAGAGTTTGATGATGTGAACGGAAAAGTTCTCACCTACTCTGCCCAGGATGGCATCTATAAGGTGTTCGACTTAAAGAACTACACATTATTGTATTCAATATCAGATGAACATGTTCAAGAGATAAAGATCAGCCCAGGGATAATGTTACTAATATTCGACAGGGCCAGTGGGCATGTTCCGTTAAAAATTCTATCTATAGAGGATGGCACTGTTTTAAAAGCATTTAATCACCTATTGCATCGCAATAAGAAGGTTGACTTTATTGAGCAGTTCAATGAGAAACTTCTCGTAAAACAAGAAAATGAGAACCTACAAATACTGGATGTTCGCAATACGCAATTGACTGAAGTAAGCAGGGCAGAGTTCTTGACTCCATCGGCATTTATCTTTCTATATGAGAATCAGTTATTCCTGACATTCCGCAATCGTACAGTGGCTGTATGGAATTTCAGAGGGGAGCTGGTTACCTCATTTGAGGACCACTTGCTATGGCATCCTGATTGCAATACAAATAACATTTATATTACTAGTGATCAAGATTTGATTATTTCTTACTGCAAGGCACTTCCTCTTTCTTCTGGAGCAGAAGAAAATGTTGGTTCTATAAATATAAGCAACATATTAACTGGAAAGTGCCTGGCGAAGATTCGTGCGAATGATCCAAATGTTCAGATTAGTCCTAGAAATCGCCCAAATGCCTCTACAATCAGAAGTACTGTAGAAGAAGCACTTGAAGACATCACTGCCTTATTCTACGATGAAGAGCGGAATGAAATATATACTGGCAATTGGCATGGCTTGGTTCATGTCTGGTCTAACTGA___TTAATGTCTGTATGTTGTGCATACCCAGTCAATCATTCACTGGATTTTATGTCGAAATCTCAAGCACTGGGGCCTGACAGTGTTGCTAATTGTTCGAGTGTTTGGATTATGCTTCTTGATAGCAAGAAATATGGAAATTTAAGATGCTTGATTAACAGTGATATAGAAAGGAGCTCGTGGCAACATAATTCAAATTATGAAAGTTTTGATTCTTCAAATGTACACGCCAAGTGTGTTTGATAGGTCAGTTGTCTGATAATATGACTCAGTGGGCAGGTGCTCAAATTGCAGAAAGTTGCGATTGATACAGTAGATAGTTTAGTCTCCTGTAAATCTGTATTCTGAATTGTAATTGACCCTTACCATGGAAGGGTCTCTAATTTAATATTTTCTTTATTTTTTGTAGAAGACCTGTTTTCTCATGTGTTTTTAAAGCTCTGCAGAACGTTGGAATCAAGATCTAAGGATCGTAAATTTTATAAAAGGCAAAAGCTTAATCTCTGCAATGCTCAAGAGACATGCAATTGAAATACTTACCTTTATCCTACAAGTGTGTAAAATGAATATATTATCACC

Fln Alignment:

sp_v1.1_unigene20243___SPGIMLLIFDRASGHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNTQLTEVSRAEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKALPLSSGAEENVGSINISNILTGKCLAKIRANDPNVQISPRNRPNASTIRSTVEEALEDITALFYDEERNEIYTGNWHGLVHVWSN
D5A8E8_______________SSGIMLLIFDRASGHVPLKILSIEDGTVLKAFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNSQLTEVSRAEFLTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKALPLSSGAEENVGSINISNILTGKCLAKIRANDPNVQISPRNRPNASTIRSTVEEALEDITALFYDEERNEIYTGNWHGLVHVWSN

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
330	75		25		0.996473
420		75	25		0.996473
881	80		20		0.995493
882		80	20		0.995493
1173		88		11	0.923564
1445		71		28	1.0
1633	14	85			0.993533
1635			14	85	0.993533
1636		85	14		0.993533
1637			14	85	0.993533
1700		18	81		0.999994
1942	90		9		0.999842
1943	90			9	0.999842
1945	9	90			0.999872
1946	90	9			0.999872
1949			90	10	0.999898
1954		90		10	0.999898
1956		10	90		0.999898
2339	75	25			0.996473
2383	33		66		0.997452
2384	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain