SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20217

Length: 1116 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20217

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nuclear transport factor 2 n=5 Tax=Brassicaceae RepID=NTF2_ARATH	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	nuclear transport factor 2	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	protein import into nucleus	GO:0006606	Biological Process	86%
Blast2go	Ran GTPase binding	GO:0008536	Molecular Function	86%
Blast2go	cytoplasm	GO:0005737	Cellular Component	86%
Blast2go	nuclear envelope	GO:0005635	Cellular Component	86%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
42	33	66			0.997452
43		66		33	0.997452
44		66	33		0.997452
45		66	33		0.997452
46		66	33		0.997452
113			66	33	0.997452
347		75		25	0.996473
453		16	66		0.988813
454		16	83		0.994512
457	16	66	16		0.988813
458		66		33	1.0
460	33	66			1.0
461	16	16		66	0.988813
462		16	83		0.994512
463		16	66	16	0.988813
466	16		83		0.994512
467		83	16		0.994512
471			83	16	0.994512
472		16		83	0.994512
709	31			68	1.0
966		37		62	1.0
1083	11			77	0.967733
1085	25	12		62	1.0
1087	11		11	77	0.967733

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain