SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20198

Length: 1972 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20198
CGTCGTGACCTTGGCTGTCACTCAGGAATTTTAAGTCGGTGGCATAAAGCCAGCATTGTCATCAACACTGACACCCCGCGGAGGGGTCGAGCCAAGCTTGCCTGGTCATCGTTTGAAGATACCTTATCAGTACAAATGGGAGGGGGTTCTAACGTTTGACCTTGGCTTTCCCTCATTTGGACGTCTTTTAACTTTGATTTTTGTTCTTCCAGGGGAAGTGCAGACAAGCCTGATCTGTTGATAGAAACTTGAACAGAGTTCGATGGCAGCTTCCATGGCGTCCTGGACATGTTCTCGCATATCTCCGCTTCAACAGAAATTAAGAGCAAATGCATACCCTTCTCCACACATCAGCAGAATCTTCTTATCACTCGCTCAATTATCCTCTCAACTAAATTTGCGGAGCAAAATTTTGAGCCCTGACTGTGCGTACCAGCTTGGCAATGGAGCAAAAGGAATTGGGATTTCTTCTTTTTTGCCCCGGGCCTCGGATAATGGAAGGAGGCAAATGTTGTGCAAAGCGGAAGAAAATGCTGTTGGGGATGTTCCTAGTGCAGTTTCCAGTGAGATGAGTCCATTTGAGAGGGTAGTAGAGTTGTTGACAACTCTCTTTCCTGTTTGGGTGGTAATTGGAGCATCTATTGGCATATACAAACCCTCAGCGGTTACATGGTTGCAAACAGATTTGTTCACTGTGTGTCTAGGGTTTCTCATGTTGTCTATGGGCTTGACACTGACATTCGATGATTTCAGGAGATGCTTACGGAATCCATGGACAGTGGGTGTGGGGTTTTTAGCACAATACCTTGTCAAACCACTTCTAGGATTCGTAATTGCTTTGAGCTTAAAACTTTCTGCTCCTCTTGCAACTGGCCTTATTTTAGTTTCCTGCTGCCCTGGTGGTCAAGCATCAAATGTTGCAACTTACATATCTAAGGGAAATGTGGCACTTTCTGTCCTCATGACAACTTGTTCAACTATTGGTGCTATTATTATGACTCCACTTCTTACCAAGCTTCTTGCGGGCCAGTTAGTCCCAGTTGATGCAGCGGGTCTGGCTCTGAGCACATTTCAAGTTGTATTGCTGCCCACTATAATTGGAGTACTATCGCATGAGTATTTTCCAAAATTCACAAACAAAATTATAACCTTCACACCATTGGTTGGTGTCATTCTCACAACTCTGCTCTGTGCTAGCCCTATTGGTCAGGTGTCAGGAGTTTTACAGTCTCAAGGAGCAGGGCTCATAATACCGGTTGCAATTTTACATGCAGCTGCATTTGCCCTTGGCTATTGGGTTTCTAAATGGTCATCATTTGGTGAATCTACTTCTCGCACAATATCAATAGAATGTGGCATGCAGAGCTCAGCGCTTGGATTCCTGCTAGCACAGAAACACTTCACAAATCCACTGGTTGCTGTTCCTTCGGCTGTCAGCGTTGTCTTCATGGCGCTGGGAGGAAGCGCGCTGGCTGTTTACTGGAGGAATATGCCAATTCCCTTTGACGATAAGGATGATTTCAAGGAGTAATTGCAGTTGCTTGTTAATATTTTTGACATACAAATAATTGAGGAGAAACTTGTCTAGTAGCCATCTTGCTACAGATATAGGTCTGGAGGAATGGACCATATTAGAGGATCTTCTTGGTTTTCTTTCCTCTTCTATCTTAGCTCACAAACAGGTGTTTCAAGTGAAAACTGAAAGTTGATAAATAACACTGGATTGTTGCAATCAAGTCCATTAGCTGTTGGTCTTTATTCTTTTAGTAGCTTATTCAAAGCATGTATAATGTGGATCATCAATGAATATTAGTTGGATCATTAGAGGATTTCAGCGTTTTAATGGACTGCTCATGTTGTGAGCACGTATTTGTGTTTTAAATATGTTTCTTAATCTAACGGCCTCTATGAGGAGAATCTTTTAGATATGAAATTGCTTTAACATCAAAGCATAATTTAACATGGAGTAATT

Ace file of the UniGene sp_v1.1_unigene20198

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	bile acid:sodium symporter family protein	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	bile acid:na+ symporter family protein	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Bile acid:sodium symporter	IPR002657	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUU8

Fln msg:

Fln protein: MAASMASWTCSRISPLQQKLRANAYPSPHISRIFLSLAQLSSQLNLRSKILSPDCAYQLGNGAKGIGISSFLPRASDNGRRQMLCKAEENAVGDVPSAVSSEMSPFERVVELLTTLFPVWVVIGASIGIYKPSAVTWLQTDLFTVCLGFLMLSMGLTLTFDDFRRCLRNPWTVGVGFLAQYLVKPLLGFVIALSLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLLPTIIGVLSHEYFPKFTNKIITFTPLVGVILTTLLCASPIGQVSGVLQSQGAGLIIPVAILHAAAFALGYWVSKWSSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVFMALGGSALAVYWRNMPIPFDDKDDFKE*

Protein Length: 424

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGAATTTTAAGTCGGTGGCATAAAGCCAGCATTGTCATCAACACTGACACCCCGCGGAGGGGTCGAGCCAAGCTTGCCTGGTCATCGTTTGAAGATACCTTATCAGTACAAATGGGAGGGGGTTCTAACGTTTGACCTTGGCTTTCCCTCATTTGGACGTCTTTTAACTTTGATTTTTGTTCTTCCAGGGGAAGTGCAGACAAGCCTGATCTGTTGATAGAAACTTGAACAGAGTTCG_-_ATGGCAGCTTCCATGGCGTCCTGGACATGTTCTCGCATATCTCCGCTTCAACAGAAATTAAGAGCAAATGCATACCCTTCTCCACACATCAGCAGAATCTTCTTATCACTCGCTCAATTATCCTCTCAACTAAATTTGCGGAGCAAAATTTTGAGCCCTGACTGTGCGTACCAGCTTGGCAATGGAGCAAAAGGAATTGGGATTTCTTCTTTTTTGCCCCGGGCCTCGGATAATGGAAGGAGGCAAATGTTGTGCAAAGCGGAAGAAAATGCTGTTGGGGATGTTCCTAGTGCAGTTTCCAGTGAGATGAGTCCATTTGAGAGGGTAGTAGAGTTGTTGACAACTCTCTTTCCTGTTTGGGTGGTAATTGGAGCATCTATTGGCATATACAAACCCTCAGCGGTTACATGGTTGCAAACAGATTTGTTCACTGTGTGTCTAGGGTTTCTCATGTTGTCTATGGGCTTGACACTGACATTCGATGATTTCAGGAGATGCTTACGGAATCCATGGACAGTGGGTGTGGGGTTTTTAGCACAATACCTTGTCAAACCACTTCTAGGATTCGTAATTGCTTTGAGCTTAAAACTTTCTGCTCCTCTTGCAACTGGCCTTATTTTAGTTTCCTGCTGCCCTGGTGGTCAAGCATCAAATGTTGCAACTTACATATCTAAGGGAAATGTGGCACTTTCTGTCCTCATGACAACTTGTTCAACTATTGGTGCTATTATTATGACTCCACTTCTTACCAAGCTTCTTGCGGGCCAGTTAGTCCCAGTTGATGCAGCGGGTCTGGCTCTGAGCACATTTCAAGTTGTATTGCTGCCCACTATAATTGGAGTACTATCGCATGAGTATTTTCCAAAATTCACAAACAAAATTATAACCTTCACACCATTGGTTGGTGTCATTCTCACAACTCTGCTCTGTGCTAGCCCTATTGGTCAGGTGTCAGGAGTTTTACAGTCTCAAGGAGCAGGGCTCATAATACCGGTTGCAATTTTACATGCAGCTGCATTTGCCCTTGGCTATTGGGTTTCTAAATGGTCATCATTTGGTGAATCTACTTCTCGCACAATATCAATAGAATGTGGCATGCAGAGCTCAGCGCTTGGATTCCTGCTAGCACAGAAACACTTCACAAATCCACTGGTTGCTGTTCCTTCGGCTGTCAGCGTTGTCTTCATGGCGCTGGGAGGAAGCGCGCTGGCTGTTTACTGGAGGAATATGCCAATTCCCTTTGACGATAAGGATGATTTCAAGGAGTAA___TTGCAGTTGCTTGTTAATATTTTTGACATACAAATAATTGAGGAGAAACTTGTCTAGTAGCCATCTTGCTACAGATATAGGTCTGGAGGAATGGACCATATTAGAGGATCTTCTTGGTTTTCTTTCCTCTTCTATCTTAGCTCACAAACAGGTGTTTCAAGTGAAAACTGAAAGTTGATAAATAACACTGGATTGTTGCAATCAAGTCCATTAGCTGTTGGTCTTTATTCTTTTAGTAGCTTATTCAAAGCATGTATAATGTGGATCATCAATGAATATTAGTTGGATCATTAGAGGATTTCAGCGTTTTAATGGACTGCTCATGTTGTGAGCACGTATTTGTGTTTTAAATATGTTTCTTAATCTAACGGCCTCTATGAGGAGAATCTTTTAGATATGAAATTGCTTTAACATCAAAGCATAATTTAACATGGAGTAATT

Fln Alignment:

sp_v1.1_unigene20198___MAASMASWTCSRISPLQQKLRANAYPSPHISRIFXXXXXXXXXXXXXXKILSPDCAYQ-LGNGAKGIGISSFLPRASDNGRRQMLCKAEENAVGDVPSAVSSEMSPFERVVELLTTLFPVWVVIGASIGIYKPSAVTWLQTDLFTVCLGFLMLSMGLTLTFDDFRRCLRNPWTVGVGFLAQYLVKPLLGFVIALSLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLLPTIIGVLSHEYFPKFTNKIITFTPLVGVILTTLLCASPIGQVSGVLQSQGAGLIIPVAILHAAAFALGYWVSKWSSFGESTSRTISIECGMQSSALGFLLAQKHFTNXXXXXXXXXXXXFMALGGSALAVYWRNMPIPFDDKDDFKE
A9NUU8_______________MAASMASWTCSRISPLQQKLRTDAYPSPYIRRVSLSLAQLSSQLNLRSKILNPDCGYQQLGIGAKGIGISSLLPRPSDNGRMQMLCKAEANAVGDVPGSASSEMSPFERVVELLTTLFPVWVVIGAAIGIYKPSVVTWLQTDLFTLGLGFLMLSMGLTLKFDDFKRCLRNPWTVGVGFLAQYLIKPLLGFAIALSLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLAVSTFQVVLMPTIIGVLLHEYFPKFTEKIITFTPLIGVILTTLLCASPIGQVSGVLKSQGAGLVLPVAILHAVAFSLGYWVSKWSSFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVFMALGGSVLAVYWRNVPIPFDDKDDFKE

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
524	80		20		0.995493
689	88	11			0.999952
690			11	88	0.999952
692		11		88	0.999952
695	11			88	0.999952
697	88	11			0.999952
698		88		11	0.999952
701			11	88	0.999952
702		11	88		0.999952
707	11			88	0.999952
708	88	11			0.999952
709			88	11	0.999952
710		11	88		0.999952
711	11		88		0.999952
1419	4	17	78		1.0
1420		4	95		0.995482
1422	2	17		80	1.0
1424		80	2		1.0
1428	19			80	1.0
1746	11		88		0.999952
1953	37		62		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain