SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20195

Length: 650 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20195

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG2166 SufE protein probably involved in Fe-S center assembly	-	-	2.0e-10	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	iron-sulfur cluster assembly	GO:0016226	Biological Process	79%
Blast2go	enzyme activator activity	GO:0008047	Molecular Function	79%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	BolA protein	IPR002634	-	0.0	79%
Blast2go	Fe-S metabolism associated domain, SufE-like	IPR003808	-	0.0	79%

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
24		66	33		0.997452
25			33	66	0.997452
26		66	33		0.997452
27	66		33		0.997452
66	16	83			0.994512
300	66		33		1.0
312	16	83			0.994512
315	66	33			1.0
425		71		28	1.0
434		57		42	1.0
515	25		75		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain