SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20168

Length: 1485 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20168

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger, C3HC4 type family protein	-	-	2.0e-05	27%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	41%
Blast2go	hypothetical protein RCOM_0708150 [Ricinus communis]	-	-	2.43025e-12	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RR01

Fln msg: your sequence is shorter than subject: 402 - 425

Fln protein: VVTLAVTHLLDMAEARREIVMALKFHRATMGSNATTKPNAATSCPSKEADKMEPRRNSVKFCQENNRCHACIIKPGTSRANEAKTITACSHLLCWVCLEEWLNFTYLTNDCPVCSRPLRSNDVTPLSSFHTLEQGKSREIQEPSNLETHVQATHPHGNSFIFSEIQQDQSSISRGLSMQHEQLYPDSKILLSSPPTSWSNSCLLPLPPMDFSPTLSQFSPHPSADSYSDHDLLMAESTRSSSSCQITTVSSESCSPPIQSIIELSTDQEYKSWHVAMDDEELAEIRSIGDQYEMEWNDTINLVNSAWWFKFLSTKELPDSQAKICEGFGYSGFDYMLPALPSDTLWPDELIDSHDWGCFEFGDNMSYMSEPSINSESSATPKSFDSEETLIDTVIQSCNVS*

Protein Length: 403

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGCTCGACATGGCAGAAGCGAGGAGAGAAATAGTTATGGCCCTAAAATTTCACAGAGCTACCATGGGTTCAAATGCAACTACAAAACCCAACGCAGCTACCAGCTGCCCCTCCAAAGAAGCTGACAAAATGGAGCCCAGGAGGAACAGCGTTAAATTCTGCCAAGAAAACAACAGATGCCATGCCTGTATCATAAAGCCAGGCACTAGCAGAGCAAATGAGGCCAAAACCATAACTGCTTGTAGTCATCTTCTGTGTTGGGTATGCCTAGAGGAATGGCTAAACTTCACTTACCTTACCAATGATTGTCCTGTTTGCTCTAGACCCCTTAGAAGCAACGATGTCACGCCACTCAGCTCTTTCCATACATTAGAACAAGGCAAAAGTAGGGAGATACAAGAGCCTAGTAATTTGGAAACCCATGTCCAAGCAACCCATCCACATGGAAATTCATTCATTTTTTCTGAAATACAACAGGATCAAAGCTCTATCAGCCGTGGATTGTCCATGCAGCACGAACAACTGTACCCTGACAGTAAAATTCTGCTCTCCAGTCCTCCAACTTCATGGTCAAATAGTTGTTTGCTTCCTTTGCCACCCATGGATTTTTCACCGACTTTATCTCAATTCTCCCCACACCCATCGGCTGATTCCTATTCTGATCATGATCTCCTAATGGCCGAATCAACTAGGTCTTCATCCTCGTGTCAAATTACCACAGTTTCTTCAGAGTCCTGCTCACCACCCATCCAAAGTATCATCGAATTATCAACAGATCAGGAGTATAAATCTTGGCATGTAGCGATGGACGATGAAGAGTTGGCTGAAATCAGATCCATTGGAGATCAATACGAGATGGAGTGGAATGATACCATCAATCTCGTGAACTCGGCATGGTGGTTTAAATTTCTCTCCACCAAAGAGCTTCCAGATTCTCAAGCCAAAATCTGTGAAGGATTTGGATACAGTGGTTTTGATTATATGCTGCCTGCACTGCCCTCAGATACCCTCTGGCCGGACGAACTTATTGACTCGCATGATTGGGGTTGCTTTGAATTTGGAGACAACATGTCATATATGTCCGAACCATCCATCAATTCAGAGTCTTCGGCAACACCAAAATCATTCGACTCCGAGGAGACATTAATTGATACAGTGATACAAAGCTGCAATGTCAGTTAG___GGGCAGGATAAAATTCGGTATTTTGTAGCGCAACTTTTGCAATAGCTTTGCTGGTTTTTAGGGTAAGTGTGTTGTCAAGAAAAGTGTTTTTGGAATTGAATGTGATATTGTAGGAGCTCAAGTGAAGGTAGAGATCTACTCAATTCAGTTGGATATCATATATCCAGAACAGATTCATGGTTATAAATCCAGAACATTGTTGAAAATTTCTCAGAACATTCATGACGTTTGTGCTGATCAGCCATGGACAAACAGAGTTTCAAAATATTAATATTATT

Fln Alignment:

sp_v1.1_unigene20168___PPIQSIIELSTDQEYKSWHVAMDDEELAEIRSIGDQYEMEWNDTINLVNSAWWFKFLSTKELPDSQAKI-CEGFGYSGFDYMLPALPSDTLWPDELIDSHDWGCFEFGDNMSYMSEPSI
B9RR01_______________PP--AICDLTESYGGGGLHQVVDDEEMAEMRSIGEQHQMEWNDTMNLVTSAWWFKFLKTM---DSGHEVKTEDDGYQPFDEVM-EFPSWLNANDACLQQH----FDDYSTEDYYHDPSL

SNPs (tot: 79)

Position	A %	C %	G %	T %	Probability
33	66			33	0.997452
35	66		33		0.997452
38	33		66		0.997452
41		33	66		0.997452
42	66			33	0.997452
43	66			33	0.997452
47	66	33			0.997452
48			66	33	0.997452
50	66			33	0.997452
51		33	66		0.997452
53		33	66		0.997452
54	66			33	0.997452
55	66	33			0.997452
86	66		33		0.997452
144	66		33		0.997452
250		66	33		1.0
581	25	62	12		1.0
582	87			12	0.992554
584	12			87	0.992554
589		87		12	0.992554
590	87		12		0.992554
591	87		12		0.992554
599		12	87		0.992554
634	88	11			0.923564
635			11	88	0.923564
637		11		88	0.923564
638			11	88	0.923564
640		88	11		0.923564
645	88		11		0.923564
921			80	20	0.995493
922		80	20		0.995493
924		20		80	0.995493
925		20	80		0.995493
926			80	20	0.995493
932			20	80	0.995493
934	80	20			0.995493
936	80	20			0.995493
938	20			80	0.995493
943			20	80	0.995493
944		80		20	0.995493
945		80	20		0.995493
949	71		14	14	0.984337
950	71			28	1.0
951	71	14	14		0.984337
953		14		14	0.984337
954	71		14	14	0.984337
955	14		85		0.993533
956		14		14	0.984337
958	14			85	0.993533
959		14		85	0.993533
960		71	14	14	0.984337
962	85			14	0.993533
964	85			14	0.993533
965		14		85	0.993533
966	14			85	0.993533
1017		90		10	0.90298
1018			20	80	0.999996
1021		90	10		0.90298
1023			90	10	0.90298
1028			90	10	0.90298
1029		10	10	10	0.922578
1034		90	10		0.90298
1035	90			10	0.90298
1036		10	90		0.90298
1038		10		90	0.90298
1039	90			10	0.90298
1041	10	90			0.90298
1158	88	11			0.923564
1159			11	88	0.923564
1163	88			11	0.923564
1164		88	11		0.923564
1165	11			88	0.923564
1168			90	10	0.90298
1169	90			10	0.90298
1171		10	90		0.90298
1172	90			10	0.90298
1174	90			10	0.90298
1177		10		90	0.90298
1266	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain