SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20163

Length: 3424 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20163
CGTCGTGACCTTGGCTGTCACTCATTTTTTTGTGTGCAGCCTTTGTTATTTCTTTGAAGATACGAGCCGAAGACTTGCTCATTAAAGAGCAAAGACTGGAAAAGGAGCCTCGGGTGCAGCACTCTGTATATTTGTTCTTTTTTGGGTTTAAATTCCATGTTTTCGAGGATTTTTTGGGGGCTTTAGGGTTGTCAGACGAGGGCTTTTGGAGTGGGTTTTGTAATTATTCTAATGGGGTGCGTTTGCGGCAAACCCTCTGCGAGGGCCGCGGATTATGCAGAGAGCCCTGCAGAGAAGGGGGCATCCTCCAATAGCCGATCTTCTTCTATGGCGTCTCGGCGGTTGGTAGCCCCCGCTGTCATAGACCAGGGCATTGATGCCGAGAACGGACACGAGGGGGATTATAGGACTAAATTGAGAGGAAAACAGAGCAATGGTGCTGATCCAGTTTCATTGTTGTCGGACGACGCTGAAAAGCAACGGCACTATCGGCACCATCAGCATCAGCAGCATCATCCTATTCGTTCTCATCATCTGCGGCCACAGGGGAATTCGTTCCCAACGCCAATTCTAATCCCAGGTTCGGGAATCCTCCCAGGCACATCGAAGGCGAGCAGGTTGCTGCAGGATGGCCAGCCTGGCTTACTGCTGTGGCTGGCGAAGCGATCAAAGGCTGGATCCCACGCCGGGCCGACTCTTTTGAGAAGCTCGATAAGATTGGACAAGGAACTTACAGCAATGTGTATAAAGCACGTGATTTAGATACTGGAAAAATTGTTGCCCTAAAGAAGGTGCGGTTTGACAATTTGGAGCCTGAAAGTGTGCGCTTTATGGCTAGAGAGATACAGGTTTTACGTAGACTAGACCATCCAAATGTAGTGAAGTTGGAAGGATTGGTCACATCAAGGATGTCCTGCAGCTTGTACCTTGTATTTGAATACATGGATCATGACCTTGCTGGCCTTGCTGCATGTCCTGGTATAAAGTTCACAGAACCGCAGGTGAAATGTTATATGCAACAATTGCTTCGAGGTCTTGATCATTGCCATAGCCGTGGTGTGCTACACCGTGATATCAAGGGTTCAAATCTTTTGATTGACAATGGCGGTATTCTAAAGATAGCTGACTTTGGCCTAGCTACCTTCTTTCACCCGGATCAGAGGCAGCCGTTGACAAGTCGTGTTGTAACACTTTGGTATCGACCTCCGGAACTTTTACTGGGTGCTACAGAGTATGGAGTTGCCGTGGATTTGTGGAGCACAGGTTGCATACTTGCAGAGTTGCTTGCTGGAAAACCTATCATGCCAGGAAGAACAGAGGTAGAACAACTCCACAAAATTTTTAAGTTGTGTGGTTCACCATCTGAAGACTATTGGAAAAAGTCAAAATTGCCACATGCAACTATCTTCAAGCCACAGCAGCCATATAAACGTTGTGTTGCAGAGACGTTTAAAGATTTTCCACCATCGGCTCTGGCACTGATGGAGGTTCTTCTTGCCATAGAACCTGCTGATCGTGGAACTGCCGCTTCAGCATTAAAGAGTGATTTCTTTACCACCAAACCACTCGCTTGTGATCCTTCAAGTTTGCCAAAGTACCCACCAAGCAAGGAGTTTGATGCAAAAATTCGTGATGAGGAGGCAAGAAGGCAAAGAGCAGCGGGAGGAAGAGGGCGTGATGTAGCTAAGCGCCCATCACGAGAATCAAGAGCAATTCCAGCACCAGAAGCAAATGCTGAATTAGCAATTTCCATACAGAAGCGGCGCTTAAGTTCACAAGGGCCTTCCAAAAGCAAGAGTGAGAAATTCAATCCCCAGCAGGAAGATGGTGCTGTGGGATTTCCTATTGAGCCTCCAAGGCCTATGCATATTGGCATTGATGCAGGTGCCACTTCTCGCATGTATTCTCAACAATTTGGGCCTTCTCATTCTGGTCCATTATCAAATCAAATTTCTAGTTCAATATGGGGAAAGAATCAGAAAGAGGACGACATACAAATGGCTCCAGGTCGTCCATCACGGTCCTCAAAAGCCACAATATCTGATTTCAGAAAACCGGGGGCCTGTGCACCCCAACCTGGAGCAGATTTGTCAAATTTATCCAGTTTAGTCGCAGCAGCAAGAAGTAATGCTGGTGTAGATACACATAAGGACCGTAGTGGCATGTGGCAACATAATCGTATTGATGCAATAGATGGTGTACATAATAATGGGAAGCATGAATTTCTTGAAGTTCCAGAACATCCAAACAGACAAGATTGGACTCGGTTCCAGCAACCAGAATCATTTAAAGGTTTAGATAATTATCACTTGCAGGATCTGCCAGCAACTCACCATCGCAAAGATGAAAGGGTTGCTAGTAAAGAAGCTACCATGAACTGGCAGGGTTATGGTGGTCAAGGGGGGGACAAAATACATTACTCAGGACCATTGCTTCCGCCTTCTGGAAATATTGATGAAATTTTGAAAGAGCATGAACGACACATTCAGCATGCTGTGCGTAGAGCTCGGCAGGACAAGGGTAGACCACAGAGAAGCAATTTATCACAAAATGAGAGGAAAGCATTCGAACACAGAAGTTTTGTTTCTGGGGTGAATGGAAATGCAGGGTATTCTGATCTTGTAAATGAATTGCCCATTTCAGTAGGTGGCAGTAGGTTGAAAGTGAGCAAGACAAGAGGGACTGAAGAAATAGTTGAGCTGAGGGAGTTGGAGAGGGAACCCCTCTCATCAGTAATGGAGAAGTATGAAAGAGAGCATGAAATGTGATACCTTCTATGTAGTCTTGTTTTACTTCATTTTAGGTTCTGCAGGTGAGATAGAAGAGATGAGACTGTTCTGCTGTGCATATACCTCAACTGGTTAATTGCATTACAGAAAGAACTTTCAACATCTGGTTTTGTATGAAAGAGGCAGAAGAGTTGAGAGCTTAATTTAGTTTAAGCTCAAGGTTCAGAGAATTCTTGCAGGACTGGGACCTGGGATATTTGAAAACAACATATAGGTTTTCCCTATGAAAATGTACTGAATTTATTGTATTTTAGATTCTTGATGGCCATCTAAACTTCCGGCTGCTTGGTGCAACATTGATGGACTGATGTAGTTAAGGTCTTGACCTTTGTTGCATTTTGCTTTGCATGCAACCATGGTTGTAGATCTCATGCATGTACGAATGTAGAGGACCTGGTCTCAGAATGTTATTTGCTGCTTTGTTTTACTGTTGAAGTGAAATGCAGGCAAGCTTCACCAAGGTATTCCCACTAATATCATCACAGAACTTTTGGATTAAAAACTGGCCTCCTCAAGAAATTGGTCAACAAAGTAAGAAGCTATTATGTTGGTTATTTTGTTCTTAAGCTTCGCCAAGGTTTTTACCACTAATATCATTTCAGAACTTTTTGGATAAAAACTGACCTCAAGAATGT

Ace file of the UniGene sp_v1.1_unigene20163

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cell division protein kinase, putative (EC:2.7.11.23)	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	cell division protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	74%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	74%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	74%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	74%
Blast2go	Protein kinase-like domain	IPR011009	-	74%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	74%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	74%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXN0

Fln msg: W1: There is no M at the beginning, your sequence is longer than subject: 765 - 575

Fln protein: KATALSAPSASAASSYSFSSSAATGEFVPNANSNPRFGNPPRHIEGEQVAAGWPAWLTAVAGEAIKGWIPRRADSFEKLDKIGQGTYSNVYKARDLDTGKIVALKKVRFDNLEPESVRFMAREIQVLRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMDHDLAGLAACPGIKFTEPQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNGGILKIADFGLATFFHPDQRQPLTSRVVTLWYRPPELLLGATEYGVAVDLWSTGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWKKSKLPHATIFKPQQPYKRCVAETFKDFPPSALALMEVLLAIEPADRGTAASALKSDFFTTKPLACDPSSLPKYPPSKEFDAKIRDEEARRQRAAGGRGRDVAKRPSRESRAIPAPEANAELAISIQKRRLSSQGPSKSKSEKFNPQQEDGAVGFPIEPPRPMHIGIDAGATSRMYSQQFGPSHSGPLSNQISSSIWGKNQKEDDIQMAPGRPSRSSKATISDFRKPGACAPQPGADLSNLSSLVAAARSNAGVDTHKDRSGMWQHNRIDAIDGVHNNGKHEFLEVPEHPNRQDWTRFQQPESFKGLDNYHLQDLPATHHRKDERVASKEATMNWQGYGGQGGDKIHYSGPLLPPSGNIDEILKEHERHIQHAVRRARQDKGRPQRSNLSQNERKAFEHRSFVSGVNGNAGYSDLVNELPISVGGSRLKVSKTRGTEEIVELRELEREPLSSVMEKYEREHEM*

Protein Length: 766

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTGTGTGCAGCCTTTGTTATTTCTTTGAAGATACGAGCCGAAGACTTGCTCATTAAAGAGCAAAGACTGGAAAAGGAGCCTCGGGTGCAGCACTCTGTATATTTGTTCTTTTTTGGGTTTAAATTCCATGTTTTCGAGGATTTTTTGGGGGCTTTAGGGTTGTCAGACGAGGGCTTTTGGAGTGGGTTTTGTAATTATTCTAATGGGGTGCGTTTGCGGCAAACCCTCTGCGAGGGCCGCGGATTATGCAGAGAGCCCTGCAGAGAAGGGGGCATCCTCCAATAGCCGATCTTCTTCTATGGCGTCTCGGCGGTTGGTAGCCCCCGCTGTCATAGACCAGGGCATTGATGCCGAGAACGGACACGAGGGGGATTATAGGACTAAATTGAGAGGAAAACAGAGCAATGGTGCTGATCCAGTTTCATTGTTGTCGGACGACGCTGAAAAGCAACGGCACTATCGGCACCATCAGCATCAGCAGCATCATCCTATTCGTTCTCATCATCTGCGGCCACAGGGGAATTCGTTCCCAACGCCAATTCTAATCCCAGGTTCGGGAATCCTCCCAGGCACATCGAAGGCGAGCAGGTTGCTGCAGGATGGCCAGCCTGGCTTACTGCTGTGGCTGGCGAAGCGATCAAAGGCTGGATCCCACGCCGGGCCGACTCTTTTGAGAAGCTCGATAAGATTGGACAAGGAACTTACAGCAATGTGTATAAAGCACGTGATTTAGATACTGGAAAAATTGTTGCCCTAAAGAAGGTGCGGTTTGACAATTTGGAGCCTGAAAGTGTGCGCTTTATGGCTAGAGAGATACAGGTTTTACGTAGACTAGACCATCCAAATGTAGTGAAGTTGGAAGGATTGGTCACATCAAGGATGTCCTGCAGCTTGTACCTTGTATTTGAATACATGGATCATGACCTTGCTGGCCTTGCTGCATGTCCTGGTATAAAGTTCACAGAACCGCAGGTGAAATGTTATATGCAACAATTGCTTCGAGGTCTTGATCATTGCCATAGCCGTGGTGTGCTACACCGTGATATCAAGGGTTCAAATCTTTTGATTGACAATGGCGGTATTCTAAAGATAGCTGACTTTGGCCTAGCTACCTTCTTTCACCCGGATCAGAGGCAGCCGTTGACAAGTCGTGTTGTAACACTTTGGTATCGACCTCCGGAACTTTTACTGGGTGCTACAGAGTATGGAGTTGCCGTGGATTTGTGGAGCACAGGTTGCATACTTGCAGAGTTGCTTGCTGGAAAACCTATCATGCCAGGAAGAACAGAGGTAGAACAACTCCACAAAATTTTTAAGTTGTGTGGTTCACCATCTGAAGACTATTGGAAAAAGTCAAAATTGCCACATGCAACTATCTTCAAGCCACAGCAGCCATATAAACGTTGTGTTGCAGAGACGTTTAAAGATTTTCCACCATCGGCTCTGGCACTGATGGAGGTTCTTCTTGCCATAGAACCTGCTGATCGTGGAACTGCCGCTTCAGCATTAAAGAGTGATTTCTTTACCACCAAACCACTCGCTTGTGATCCTTCAAGTTTGCCAAAGTACCCACCAAGCAAGGAGTTTGATGCAAAAATTCGTGATGAGGAGGCAAGAAGGCAAAGAGCAGCGGGAGGAAGAGGGCGTGATGTAGCTAAGCGCCCATCACGAGAATCAAGAGCAATTCCAGCACCAGAAGCAAATGCTGAATTAGCAATTTCCATACAGAAGCGGCGCTTAAGTTCACAAGGGCCTTCCAAAAGCAAGAGTGAGAAATTCAATCCCCAGCAGGAAGATGGTGCTGTGGGATTTCCTATTGAGCCTCCAAGGCCTATGCATATTGGCATTGATGCAGGTGCCACTTCTCGCATGTATTCTCAACAATTTGGGCCTTCTCATTCTGGTCCATTATCAAATCAAATTTCTAGTTCAATATGGGGAAAGAATCAGAAAGAGGACGACATACAAATGGCTCCAGGTCGTCCATCACGGTCCTCAAAAGCCACAATATCTGATTTCAGAAAACCGGGGGCCTGTGCACCCCAACCTGGAGCAGATTTGTCAAATTTATCCAGTTTAGTCGCAGCAGCAAGAAGTAATGCTGGTGTAGATACACATAAGGACCGTAGTGGCATGTGGCAACATAATCGTATTGATGCAATAGATGGTGTACATAATAATGGGAAGCATGAATTTCTTGAAGTTCCAGAACATCCAAACAGACAAGATTGGACTCGGTTCCAGCAACCAGAATCATTTAAAGGTTTAGATAATTATCACTTGCAGGATCTGCCAGCAACTCACCATCGCAAAGATGAAAGGGTTGCTAGTAAAGAAGCTACCATGAACTGGCAGGGTTATGGTGGTCAAGGGGGGGACAAAATACATTACTCAGGACCATTGCTTCCGCCTTCTGGAAATATTGATGAAATTTTGAAAGAGCATGAACGACACATTCAGCATGCTGTGCGTAGAGCTCGGCAGGACAAGGGTAGACCACAGAGAAGCAATTTATCACAAAATGAGAGGAAAGCATTCGAACACAGAAGTTTTGTTTCTGGGGTGAATGGAAATGCAGGGTATTCTGATCTTGTAAATGAATTGCCCATTTCAGTAGGTGGCAGTAGGTTGAAAGTGAGCAAGACAAGAGGGACTGAAGAAATAGTTGAGCTGAGGGAGTTGGAGAGGGAACCCCTCTCATCAGTAATGGAGAAGTATGAAAGAGAGCATGAAATGTGA___TACCTTCTATGTAGTCTTGTTTTACTTCATTTTAGGTTCTGCAGGTGAGATAGAAGAGATGAGACTGTTCTGCTGTGCATATACCTCAACTGGTTAATTGCATTACAGAAAGAACTTTCAACATCTGGTTTTGTATGAAAGAGGCAGAAGAGTTGAGAGCTTAATTTAGTTTAAGCTCAAGGTTCAGAGAATTCTTGCAGGACTGGGACCTGGGATATTTGAAAACAACATATAGGTTTTCCCTATGAAAATGTACTGAATTTATTGTATTTTAGATTCTTGATGGCCATCTAAACTTCCGGCTGCTTGGTGCAACATTGATGGACTGATGTAGTTAAGGTCTTGACCTTTGTTGCATTTTGCTTTGCATGCAACCATGGTTGTAGATCTCATGCATGTACGAATGTAGAGGACCTGGTCTCAGAATGTTATTTGCTGCTTTGTTTTACTGTTGAAGTGAAATGCAGGCAAGCTTCACCAAGGTATTCCCACTAATATCATCACAGAACTTTTGGATTAAAAACTGGCCTCCTCAAGAAATTGGTCAACAAAGTAAGAAGCTATTATGTTGGTTATTTTGTTCTTAAGCTTCGCCAAGGTTTTTACCACTAATATCATTTCAGAACTTTTTGGATAAAAACTGACCTCAAGAATGT

Fln Alignment:

sp_v1.1_unigene20163___WIPRRADSFEKLDKIGQGTYSNVYKARDLDTGKIVALKKVRFDNLEPESVRFMA-REIQVLRRLDHPNVVKLEGLVTS--------------RMSCSLYLVFEYMDHDLAGLAACPGIKFTEPQVKCYMQQLLRGLDHCHSRGVLHRDIKGSNLLIDNGGILKIADFGLATFFHPDQRQPLTSRVVTLWYRPPELLLGATEYGVAVDLWSTGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWK-KSKLPHATIFKPQQPYKRCVAETFKDFPPSALALMEVLLAIEPADRGTAASALKSDFFTTKPLACDPSSLPKYPPSKEFDAKIRDEEXXXXXXXXXXXXDVAKRPSRESRAIPAPEANAELAISIQKRRLSSQGPSKSKSEKFNPQQEDGAVGFPIEPPRPMHIGIDAGATSRMYSQQFGPSHS
A9NXN0_______________WGSRSVSCFEKLEQIGEGTYGQVYMAKEIETGEIVALKKIRMDN-EREGFPITAIREIKLLKKLQHENVIKLKEIVTSPGPEKDEQGKSDGNKYNGSIYMVFEYMDHDLTGLAERPGMRFSVPQIKCYMKQLLIGLHYCHINQVLHRDIKGSNLLIDNNGILKLADFGLARSFCSDQNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLYGKPILPGKNEPEQLTKIFELCGSPDESNWPGVSKLPWYSNFKPQRLMKRRVRESFKNFDRHALDLVEKMLTLDPSQRICAKDALDAEYFWTDPVPCAPSSLPRYEPSHDFQTKRKRQQQRQHDEMTKRQKISQQHPQQQHVRLPPIQTAGQAHLPLR------PGP--------NPPMHNPPPQFPVGPSHYGGGPRGAGGQNR-HPQNIRPLHA

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
2151	87		12		0.992554
2292	85			14	0.993533
2712	90			10	0.90298
2786	10	90			0.90298
3129		88		11	0.999937
3259	88		11		0.923564
3260		88		11	0.923564
3262	87		12		0.992554
3263	87			12	0.992554
3265	12		87		0.992554
3266		12		87	0.992554
3267	87	12			0.992554
3270		87	12		0.992554
3271		87	12		0.992554
3273	87			12	0.992554
3274		87	12		0.992554
3276	87	12			0.992554
3278		12		87	0.992554
3299	16			83	0.994512
3300	16			83	0.994512
3302	83			16	0.994512
3303	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain