SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20150

Length: 2278 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene20150
CGTCGTGACCTTGGCTGTCACTCAGTCTTGAATTGCGTTGTAACTGTGAGTATAAAATTTCTTTCCCTGAGATCTCACAGCCTGCGCTGCAAGAAACTCGAATAACAAAACAGAGCAAGAAATTGTATATTCGGATACTATGGCTGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGTTGAGCCTGAGCAGGAGAAAGCAGTCACCCAGATGAGTGAAACCCACAAAATTTTGAGCTCTTTGCTGTGCAATGAGGAACGCGATTTCTTGATAAGAAACAATGGAGAGACGGTGAAGGTTGAGGAACTGGAAGGGAAATATGTGGGTTTGTACTTTTCTGCCCATCGGTGCCCTCCAGGTAGGGATTTCACCTCCGTTTTGTCCACAACCTATAAAAAGTTGTTGGAGAAAGGCGACTTCGAGATCGTCTTCATTTCTGCAGATCGTGATGAGAAGTCATTCGAAGAAGACCACCAGACCATGCCATGGCTTGCCGTGCCATTCTCAGACGAAAATACAAGGAAGAATCTTGATGAGAAATTTCAGGTCAATGGCATTCCGTGCCTTGTTATTTTGGACAAAACGAGGGAAGTGATAACCACTGAAGGTGTGGAGATCATTAAAGAATTTGATTTTGAGGCATATCCATTCGCTACAGAGAGGCTCGATGAGCTGAGGGCTAAAGAGGAGGCCTTGAGGGCTGCACAGACTGTAGAGTCTCTTCTAAGGTCCGATGAACGAGATTTTGTCATTGGCCATGGAGGAAGAAAGGTCCCGGTGGCGGAGCTTACAGGGAAGACAGTGGGTCTGTATTTCTCAGCCCACTGGTATGGTCCCTGTAGAAATTTCACTCCACAGCTTGTGGATATTTACAATGAGCTTTTGAAAAGAGGGGAGGACTTTGAGATTGTGTTTCTCTCGCGTGACAAAGAGGAGAAAACCTTTGAAGAGTATTACGCAAGCATGCCATGGTTAGCTTTGCCATTTGGAGACATCAATGGAAAGAAATTGTGGCGCTTCTTCGAAGTTTCTGGTATGCCAACATTGATCATTTTAGGTCCAGATGGGAAAACAGTACAGACTGATACAGTGAGCCATATACGAGACTATGGAATCCGAGCTTACCCGTTTACAAAAGATCGACTGGATGAGGTTGAAGCTGAAGACAATGCCAAACGAGAAGCACAAACCCTGGAGTCACTCTTGGTTTCTGATGCGCGCAACTTTGTGATCAAACATGGAGATGCCCAGGTCCTGGTATCTGAGCTTGTGGGCAAGACAGTTAGTTTGTATTTCTCTGCCCATTGGTGTCCTCCTTGTCGAAGTTTCACTCCAGAGCTTATAAAGGTTTACAACGAACTCAAAGAAAGAGGAGAAGATTTTGAGATCGTTTTCATTTCTATGGACCGAGATCAAGAGGCTTTTGAAGATTATTACAAAGACATGCCATGGCTGGCTCTTCCATTTGGAGATAAAACTAAGAAGGATCTCTCGCGGTATTTCCGTGTTAGAGGCATCCCATCTTTGATCGTGATTGGTCCAGATGGGAAAACTGTGACAAAGAATGCCAGAAGTGCAGTGTCCACTCATGGAGCCAGGGCTTATCCATTCACTGATGCTCATTTTCAAAGGCTGCAGAAGGAGATGAAAGAGCTTGTTGACAAATCTCCCAAGGAGATCAAGTACAGCCAGCATGAACACCAACTTGTACTGACACAAAGGCCTGTGTTCGTCTGTGATGGATGCAACAAAGACGGTAGTGCGTGGTCCTATTATTGCAAAAAATGTGACTACGATCTTCATGTGGAATGTGGTTTGAAAGATCAACAGGATCAGGTAAACCAGGAAAAGGGACAGGATACAGATACTGTTGTGGATGAGAACTGCAAGCCAGAAGGAGTAATCTGTGATGGAGATGTCTGTTACAGAGCTTAAGCTTGGTCATGATAAGGGCGACTCATTACATATGCTATACTTCCTGGCCTTCAGTACATTGCTTGAGATTCCATGGTTATCTTTGTGTAGATTGATAGATAACTGAGCTTTGTTGAGTAAAGGAGGTCATGATCTATGTTCTCAATAAATAAATTGAGTACTTCATAGTCTCTACTGGGCTTCTAGTATGGGATTTCATCAATGTTAGCATCTGGTGACTTACGGTTGTGCAATTTGCTTTTTGCATATGGATTTTATTCTCACATGTGTTGTTCAGCTCCATTGCTACGTTCCTGTGTAATTCTGAGTGTATACTGC

Ace file of the UniGene sp_v1.1_unigene20150

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoredoxin, putative n=1 Tax=Ricinus communis RepID=B9SHA0_RICCO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	dc1 domain-containing protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	72%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	72%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKG4

Fln msg:

Fln protein: MAEPEQEKAVTEQEIVCSDTMVEPEQEKAVTQMSETHKILSSLLCNEERDFLIRNNGETVKVEELEGKYVGLYFSAHRCPPGRDFTSVLSTTYKKLLEKGDFEIVFISADRDEKSFEEDHQTMPWLAVPFSDENTRKNLDEKFQVNGIPCLVILDKTREVITTEGVEIIKEFDFEAYPFATERLDELRAKEEALRAAQTVESLLRSDERDFVIGHGGRKVPVAELTGKTVGLYFSAHWYGPCRNFTPQLVDIYNELLKRGEDFEIVFLSRDKEEKTFEEYYASMPWLALPFGDINGKKLWRFFEVSGMPTLIILGPDGKTVQTDTVSHIRDYGIRAYPFTKDRLDEVEAEDNAKREAQTLESLLVSDARNFVIKHGDAQVLVSELVGKTVSLYFSAHWCPPCRSFTPELIKVYNELKERGEDFEIVFISMDRDQEAFEDYYKDMPWLALPFGDKTKKDLSRYFRVRGIPSLIVIGPDGKTVTKNARSAVSTHGARAYPFTDAHFQRLQKEMKELVDKSPKEIKYSQHEHQLVLTQRPVFVCDGCNKDGSAWSYYCKKCDYDLHVECGLKDQQDQVNQEKGQDTDTVVDENCKPEGVICDGDVCYRA*

Protein Length: 608

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCTTGAATTGCGTTGTAACTGTGAGTATAAAATTTCTTTCCCTGAGATCTCACAGCCTGCGCTGCAAGAAACTCGAATAACAAAACAGAGCAAGAAATTGTATATTCGGATACT_-_ATGGCTGAGCCTGAGCAGGAGAAAGCAGTCACAGAGCAAGAAATTGTATGTTCGGATACTATGGTTGAGCCTGAGCAGGAGAAAGCAGTCACCCAGATGAGTGAAACCCACAAAATTTTGAGCTCTTTGCTGTGCAATGAGGAACGCGATTTCTTGATAAGAAACAATGGAGAGACGGTGAAGGTTGAGGAACTGGAAGGGAAATATGTGGGTTTGTACTTTTCTGCCCATCGGTGCCCTCCAGGTAGGGATTTCACCTCCGTTTTGTCCACAACCTATAAAAAGTTGTTGGAGAAAGGCGACTTCGAGATCGTCTTCATTTCTGCAGATCGTGATGAGAAGTCATTCGAAGAAGACCACCAGACCATGCCATGGCTTGCCGTGCCATTCTCAGACGAAAATACAAGGAAGAATCTTGATGAGAAATTTCAGGTCAATGGCATTCCGTGCCTTGTTATTTTGGACAAAACGAGGGAAGTGATAACCACTGAAGGTGTGGAGATCATTAAAGAATTTGATTTTGAGGCATATCCATTCGCTACAGAGAGGCTCGATGAGCTGAGGGCTAAAGAGGAGGCCTTGAGGGCTGCACAGACTGTAGAGTCTCTTCTAAGGTCCGATGAACGAGATTTTGTCATTGGCCATGGAGGAAGAAAGGTCCCGGTGGCGGAGCTTACAGGGAAGACAGTGGGTCTGTATTTCTCAGCCCACTGGTATGGTCCCTGTAGAAATTTCACTCCACAGCTTGTGGATATTTACAATGAGCTTTTGAAAAGAGGGGAGGACTTTGAGATTGTGTTTCTCTCGCGTGACAAAGAGGAGAAAACCTTTGAAGAGTATTACGCAAGCATGCCATGGTTAGCTTTGCCATTTGGAGACATCAATGGAAAGAAATTGTGGCGCTTCTTCGAAGTTTCTGGTATGCCAACATTGATCATTTTAGGTCCAGATGGGAAAACAGTACAGACTGATACAGTGAGCCATATACGAGACTATGGAATCCGAGCTTACCCGTTTACAAAAGATCGACTGGATGAGGTTGAAGCTGAAGACAATGCCAAACGAGAAGCACAAACCCTGGAGTCACTCTTGGTTTCTGATGCGCGCAACTTTGTGATCAAACATGGAGATGCCCAGGTCCTGGTATCTGAGCTTGTGGGCAAGACAGTTAGTTTGTATTTCTCTGCCCATTGGTGTCCTCCTTGTCGAAGTTTCACTCCAGAGCTTATAAAGGTTTACAACGAACTCAAAGAAAGAGGAGAAGATTTTGAGATCGTTTTCATTTCTATGGACCGAGATCAAGAGGCTTTTGAAGATTATTACAAAGACATGCCATGGCTGGCTCTTCCATTTGGAGATAAAACTAAGAAGGATCTCTCGCGGTATTTCCGTGTTAGAGGCATCCCATCTTTGATCGTGATTGGTCCAGATGGGAAAACTGTGACAAAGAATGCCAGAAGTGCAGTGTCCACTCATGGAGCCAGGGCTTATCCATTCACTGATGCTCATTTTCAAAGGCTGCAGAAGGAGATGAAAGAGCTTGTTGACAAATCTCCCAAGGAGATCAAGTACAGCCAGCATGAACACCAACTTGTACTGACACAAAGGCCTGTGTTCGTCTGTGATGGATGCAACAAAGACGGTAGTGCGTGGTCCTATTATTGCAAAAAATGTGACTACGATCTTCATGTGGAATGTGGTTTGAAAGATCAACAGGATCAGGTAAACCAGGAAAAGGGACAGGATACAGATACTGTTGTGGATGAGAACTGCAAGCCAGAAGGAGTAATCTGTGATGGAGATGTCTGTTACAGAGCTTAA___GCTTGGTCATGATAAGGGCGACTCATTACATATGCTATACTTCCTGGCCTTCAGTACATTGCTTGAGATTCCATGGTTATCTTTGTGTAGATTGATAGATAACTGAGCTTTGTTGAGTAAAGGAGGTCATGATCTATGTTCTCAATAAATAAATTGAGTACTTCATAGTCTCTACTGGGCTTCTAGTATGGGATTTCATCAATGTTAGCATCTGGTGACTTACGGTTGTGCAATTTGCTTTTTGCATATGGATTTTATTCTCACATGTGTTGTTCAGCTCCATTGCTACGTTCCTGTGTAATTCTGAGTGTATACTGC

Fln Alignment:

sp_v1.1_unigene20150___MVEPEQEKAVTQMSETHKILSSLLCNEERDFLIRNNGETVKVEELEGKYVGLYFSAHRCPPGRDFTSVLSTTYKKLLEKGDFEIVFISADRDEKSFEEDHQTMPWLAVPFSDENTRKNLDEKFQVNGIPCLVILDKTREVITTEGVEIIKEFDFEAYPFATXXXXXXXXXXXXXXXXQTVESLLRSDERDFVIGHGGRKVPVAELTGKTVGLYFSAHWYGPCRNFTPQLVDIYNELLKRGEDFEIVFLSRDKEEKTFEEYYASMPWLALPFGDINGKKLWRFFEVSGMPTLIILGPDGKTVQTDTVSHIRDYGIRAYPFTKDRLDEVEAEDNAKREAQTLESLLVSDARNFVIKHGDAQVLVSELVGKTVSLYFSAHWCPPCRSFTPELIKVYNELKERGEDFEIVFISMDRDQEAFEDYYKDMPWLALPFGDKTKKDLSRYFRVRGIPSLIVIGPDGKTVTKNARSAVSTHGARAYPFTDAHFQRLQKEMKELVDKSPKEIKYSQHEHQLVLTQRPVFVCDGCNKDGSAWSYYCKKCDYDLHVECGLKDQQDQVNQEKGQDTDTVVDENCKPEGVICDGDVCYRA
B8LKG4_______________MAELEQEKAVTHVGETHESLSSLLCNEERDFLIRNNGDKVKVEELEGKYVGLYFSAHWCPPCRSFTPVLSEIYKKLLEKGDFDIVFISADRDEKSFEEYHHTMPWLALPFSDENTRKNLNQAFQVHGIPCLVILDKEGRVITAKGVEIIKEYSAEAYPFTAERLDELRAKEEAIRAAQTVESLLLSDERDFVLGHEGTQVPVAELAGKTVGLYFSAHWCGPCRSFTPQLVEIYNELLKKGEAFEIVFLSRDKEEKAFEEYYASMPWLALPFADNTEKNLSRYFRVPGIPTLIILGPDGKTVQTDAVGLIRDYGIRAYPFTKERLDELEAEEEAKREAQTLESLLVSDERNFVINHGDAQVLVSELVGKTVALYFSAHWCPPCRSFTPELTKVYNELKERGETFEIVFISMDRNQDAFEDYYKSMPWLALPFGDKTKKDLSRFFRVRGIPSLIVVGPDGKTVTSNARSAVSTHGARAYPFTEAHFQRLQKEMKELVENSPKEIKYNQHEHPLVLTQRPVFVCDGCNKDGSAWSYYCKKCDYDLHLPCALKDQQDPGNQEKGQNTDNAVDENCKPAGVICDGDVCYKA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
129	33		66		1.0
130			33	66	0.997452
131			33	66	0.997452
147	33			66	0.997452
1541			83	16	0.994512
1542	83		16		0.994512
1587	11		88		0.923564
1854		13		86	0.999973
1882		28	71		1.0
1966			80	20	0.999996
1985		30	70		1.0
2156			71	28	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain