SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20124

Length: 1250 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20124

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transcription factor n=1 Tax=Lycoris longituba RepID=D6MKM9_9ASPA	-	-	2.0e-20	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	transcription factor	-	-	2.03935e-30	54%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AP2/ERF domain	IPR001471	-	2.03935e-30	54%
Blast2go	DNA-binding, integrase-type	IPR016177	-	2.03935e-30	54%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWS1

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 56 aas, your sequence is shorter than subject: 237 - 419

Fln protein: MCGGEADFIPLNRSWRVTPRDFDSFADLFINRGAVSESFDKSGSFDDEDKQKIEPSKNIFNVKHEFSSGGENEVIPSLKDFKIPPLKDFEKSSAKSTGRKRTTLYRGIRQRPRGKWAAEIRDPRKGTMVWLGTFNTAEEAAKAYDAEAIKIRGKKAKLNFADHSCSVNMDTSKKMSRKKVKSCTENPDLLLGLNINSKVKPLYSRKPDLSEGYSQFLKPSAPFEMHPQNSAWHRVA*

Protein Length: 238

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCATCGTGACTGGTCAGTATTTTCTTGATCAGGTCTTTGCTTTGCATTCTGTGGCGGCAGCAGCTTCTGTTTTTAAAACAAAAAA_-_ATGTGCGGAGGTGAAGCGGATTTCATTCCCCTCAACCGATCTTGGCGTGTAACTCCCAGGGATTTTGATTCGTTCGCTGACTTGTTCATCAATCGCGGAGCTGTGTCGGAATCTTTCGATAAATCGGGCAGCTTCGATGACGAAGACAAGCAAAAAATTGAGCCCAGCAAGAATATTTTCAACGTCAAGCATGAATTTTCTTCAGGCGGTGAAAATGAGGTGATTCCTTCTTTGAAAGATTTCAAGATTCCTCCTTTGAAGGATTTCGAAAAGTCCTCAGCCAAAAGCACCGGGAGGAAGAGGACGACATTGTATAGAGGTATCAGGCAGCGTCCACGGGGAAAATGGGCTGCGGAGATTCGAGATCCCAGAAAGGGCACTATGGTTTGGCTTGGAACGTTTAATACGGCAGAGGAGGCCGCCAAGGCCTATGATGCAGAGGCTATAAAGATCAGAGGCAAGAAAGCCAAGCTTAACTTTGCCGACCACTCGTGTTCCGTGAACATGGACACTAGCAAGAAAATGTCAAGGAAGAAAGTAAAGTCATGTACAGAAAACCCTGATTTATTGTTGGGTTTGAACATAAACAGTAAGGTAAAACCTTTATATTCACGAAAGCCTGACTTATCAGAGGGTTACTCTCAGTTCCTAAAACCCAGTGCTCCATTTGAAATGCATCCACAGAACAGTGCATGGCATCGTGTAGCTTGAATTTTCCAAAGAATTATCGTGACCTTCGAATCATACCTTGGGTTGTCAGAGAGTCCTAATCTTAAGCAACTATGGATGCATCAATAGAAGTTGCGGATCAGGCTCCAGGCTCTTTTCTATATGAGGAGTGTTTCCTAAAACCCTGAATGTATGACGATCTGCCCATTTCGGATTCAGTTTACCAAAGCAGTCTCGGCGATCAGCGAATTTCAGATTCGGCTTATCAAAGTACTCTTCGGTTTTGCTAACCAGGCATATTATCAATACATAACAGGCAGGAAGACTAGGGGTTTGTGTTGCAGGCTTATGTATAGCATGTACTGTCATTTAAATTTAAACTCATGTTTTGGACCTTTTGTTTATATTTTATTATTGTTTTCAGGAGTAAAGTATCTACCAAGTCTGAAGATGGGATGTTAGAAACC

Fln Alignment:

sp_v1.1_unigene20124___MCGGE--ADFI--PLNRSWRVTPRD----FDSFADLFINRGAVSESFDKSGSFDDEDKQKIEPSKNIFNVKHEFSSGGENEVIPSLKDFKIPPLKDFEKS-SAKSTGRKRTTLYRGIRQRPRGKWAAEIRDPRKGTMVWLGTFNTXXXXXXXXXXXXIKIRGKKAKLNFADHSCSVNMDT-----SKKMSRKKVKSCT
A9NWS1_______________MCGGAIISDFIIPPANRGRRVTARDIWPDFDKFSE-FINGGAPVETFDVSVNVDDDDE-----------------------------DFDDDDFLDFDESYQNKSAGRKRKNLYRGIRQRPWGKWAAEIRDPRKGARVWLGTFNTAEEAARAYDAAARKIRGKKAKVNFVDEPPPIKKETNNGKGSRKESSKKIKSCT

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
27	33			66	0.997452
232	33		66		0.997452
977		15		84	0.999986
980	84		15		0.999986
986	84	15			0.999986
991		84	15		0.999986
993		84		15	0.999986
994	84		15		0.999986
996		15		84	0.999986
997	15			84	0.999986
999			84	15	0.999986
1000		15	84		0.999986
1030		61		38	1.0
1066		53	46		1.0
1134		45		54	1.0
1155	57			42	1.0
1171	57		42		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain