SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20117

Length: 1348 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20117

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	AS2; AS2 (ASYMMETRIC LEAVES 2); protein binding	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	specification of symmetry	GO:0009799	Biological Process	88%
Blast2go	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	88%
Blast2go	petal development	GO:0048441	Biological Process	88%
Blast2go	proximal/distal pattern formation	GO:0009954	Biological Process	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	nucleus	GO:0005634	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lateral organ boundaries, LOB	IPR004883	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9P2E3

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 16 aas, your sequence is shorter than subject: 158 - 179

Fln protein: MASSSNSPCAACKFLRRKCTLECVFAPYFPPDQPQKFANVHKIFGASNVTKLLNELHPHQREDAVNSLAYEADARVKDPVYGCVGAISILQHQVKQLQTELHHARSELSKYINAGIAIPPMGMGMGMGLAGSSRDQIFRDQNIMESHISRGPYTPGH*

Protein Length: 159

Fln nts: GAGAGCATGGAGACCAGCTTCCACCTCATTGGGATCACAACAACAACAATTCTTGCTTAACACGAGACAACAACACTGCTACTGTACCGTTCCAACTCTCAAGCTCGGCTCTTTAAGTCCTCAGTAACA_-_ATGGCGTCTTCATCCAATTCTCCTTGCGCTGCTTGCAAATTTCTTCGAAGGAAGTGCACTCTGGAATGCGTGTTTGCTCCATATTTTCCCCCGGACCAACCGCAGAAGTTCGCCAATGTTCACAAGATATTTGGAGCAAGCAACGTGACAAAGCTGCTGAATGAATTGCATCCCCACCAGCGAGAAGACGCGGTGAATTCACTGGCCTACGAGGCGGACGCGAGGGTGAAGGATCCGGTCTACGGGTGCGTGGGAGCAATTTCGATCCTGCAGCACCAGGTGAAACAGTTGCAGACAGAGCTGCATCATGCGCGCTCCGAGCTTTCCAAGTATATAAATGCAGGGATTGCAATTCCTCCGATGGGGATGGGAATGGGAATGGGATTGGCAGGATCTTCGAGGGACCAAATTTTCAGGGATCAGAATATCATGGAGTCGCATATTTCAaGGGGACCATATACTCCGGGCCACTAA___TTATGACCAGACTGACATTGTTAGGCTCAGCGGACCCGGCTATGATCCAAACTATCTAGCCATTCCCGGGAGCCTAGCTCAGGCTCAAGCCCAGGTTCAAGCTCAGGTTTTCAATCCATATCCTCGAACAGGAAGCTCAAGCGACGAACGCACCTGCATCAGCCCCCCTTACTTGCATCCGGAGAAGAGGGAGGAATAGAATTTCTTCACTTCACCGTACATTCGTGTCTCAGAAGTTACACCAAAATTTAAGCCAGTACTCTTCTTCTTCTTCCTCTTAATACATCTTGAAATGCATGAGAAGTAATAATACTTGTCTATTAAGCTTTATGCAGTTTCAAGTTCCATATGGACATCTCGTCCATATTAGCACTTGGTTCGTGCAATGGAGATAGGCATTACTTACCTTTGTGGAAGATCAAAGGTAACATCCATACGCTAGATGTTGTTCTCAGAGTCGATCACAACTTTTTTCAGAGTCGATCACAACTTATTGCCTAGTGCTGAGGAGCAGTTCAGTTATATTCCTTGAATTCATGAACTAGAGATTAGTTTAGCCCATAAACATTGTAAAATAAATGTGACAATTCTTCTCCATATATTCTGGTGTTATGTTAAGGCATGCCATTTGCATGCGAAAAATCTGTATTGGTCCATGTTCAAACTTCGAACAGTAAGTGTTGATTATGTTGTTGCTTACCAAGTTTCTTCTCAGTTCCAAATGATGAAATTCCAATATGAATCA

Fln Alignment:

sp_v1.1_unigene20117___SSNSPCAACKFLRRKCTLECVFAPYFPPDQPQKFANVHKIFGASNVTKLLNELHPHQREDAVNSLAYEADARVKDPVYGCVGAISILQHQVKQLQTELHHARSELSKY
A9P2E3_______________NTSTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKIFGASNVSKMLMEVPESQRSDTANSLVYEANARLRDPVYGSMGVISTLQHQIQSLQSELNVVRAELVRY

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
582	60		40		1.0
600		20	80		0.995493
647			83	16	0.994512
650	83		16		0.994512
654		16		83	0.994512
656		83		16	0.994512
657	83			16	0.994512
658	83		16		0.994512
659	83		16		0.994512
662	80		20		0.995493
665	16			83	0.994512
666	83	16			0.994512
667			83	16	0.994512
669	16	83			0.994512
757	88			11	0.923564
759	77		22		0.999999
760		77	11	11	0.968132
770	88		11		0.923564
776		88		11	0.923564
778	11	88			0.923564
868	83			16	0.999991

SSRs (tot: 3)

Start position	End position	Sequence	Length
37	49	ACA ACA ACA ACA A	13
496	513	ATGGGA ATGGGA ATGGGA	18
864	877	TCT TCT TCT TCT TC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain