SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20064

Length: 3140 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene20064
ATATCCTACATGGTTAGAGATCGAGGGTTGAGTCATATTGCCATTTCTTTGTGTAGCGAGTGCATTTTAGAAGTATTGAATTGTACTGGAGTACTTGAAGAATGGGTAGCATCGCTTTTGGTACGAATCCAGGCGGTAAAATTATGAGAGATAGCAGAGGATCAGCCTGCGCTTTCATAATATTGTTTGTGTTGAGTGGAAGCAATTTCATTGCAGTACAATGTTTGAACAAGCCATTCAACGTGTCCTATGATCACCGGGCTGTTATCATAGATGGGCAAAGAAGAATGCTTATATCAGCGGGAATCCATTATCCTCGCGCTACACCCGAGATGTGGCCGCATTTGCTTTCCATGAGCAAAGAAGGCGGAGCGGATGTGATCCAGACTTACACCTTTTGGAATGGTCACGAGCCTGTTAGAGGACAGTACAATTTTGCGGGGAGATATGATCTTGTTAAATTTGTGAAGCTTGTTCAAAATGCTGGGCTTTATTTGCATCTTCGAATAGGCCCCTATGTTTGTGCAGAATGGAACTTTGGGGGATTTCCTGTTTGGTTACGAGACATCCCTGGTATTGAGTTTCGAACTGATAACATGGCATTCAAGGAGGAGATGGAGAAATATGTCACAATGATAGTGAATCTCATGAAAGTGCACAAGCTTTTTTCATGGCAAGGAGGTCCAATTATTTTACTCCAGATTGAGAACGAGTATGGGAATGAGGAACACTCATTTGGTGAGAAAGGAAAACGTTATGTAAAATGGGCTGCGAGTATGGCAGAAGGACTGGATGCAGGTGTACCTTGGATCATGTGTCAACAAAGTGATGCACCAGGGAATATTATAAATTCATGCAATGGTTTCTACTGCGATGGTTTCAAGCCAAATGCATATCACAAGCCCACTCTTTGGACCGAGGATTGGAATGGATGGTTTTCAGCTTGGGGTGGTCGGGTTCCTCATAGGCCTGTGGAAGACAATGCTTTTGCAGTAGCTCGATTTTTTCAACGTGGTGGCAGCTTTCATAATTACTACATGTATTTTGGAGGGACAAACTTTGGCCGCACAGCTGGGGGACCATTTTACACAACAAGTTATGACTATGATGCTCCAATTGATGAATATGGTATGTTGAGGCAACCTAAATGGGGGCATCTGAAGGATCTTCATGCAGCCATAAAACTCTGTGAGCCAGCTCTAATTTCTGTTGATGGAGATCCTCAGTATATACGTTTTGGTCCTCAGCAAGAGGCACATGTATATAAATATTCTGGAGAATCCAAAGTTGCAAATTTGACTGTAATTAGGAAGACAGGGAAATGTGCAGCATTTCTTGCTAATATCGATAGTCATTCTTCAGCTACTGTACATTTTAATGGAAAGGTGTTTCATCTACCACCTTGGTCTGTCAGCATATTGCCTGATTGTAAGAATGTGGTATTCAACACTGCAAAGGTTGGATCTCAAACATCCATTGTAAGCACGAAAAGGAGGCCTGCTCTTTCACAAGGAATCTTTGATTCTGAAATTTTGGAACTTGGAGTAAAAGTTTCACAATTATCAAAAGTGTGGAGTGAATATAAAGAGCCAATTGGTCTGTGGGGAGAAGGAAATTTTTCAGCAAAAGGCATATTAGAACACTTAAATGTCACCAAGGATTCTACTGATTATCTATGGTATACGACAAGCATTAATATTTCAGAAGCAGACAGTGCATTCTGGTTGGTACACAATAAATATCCATCCCTTGTCATTGATGCTGTGCGTGATGTGGTCCGTATATTTGTCAATGGTCAGATTGCAGGGAGTTCAAGTGGTTATTGGGTCCGAGTGGAGCAACCTCTGAACTTAAGTATAGGGTACAACGAAATAGCTATTCTCTCTGAATTGATTGGATTACAGAACTATGGGGCTTTCCTTGAAAAAGATGGTGGAGGCTTGAGAGGTTCTGTGACATTACAAGGCCTTGTATCAGGAGATAGAAACCTAACAATGGCATGTTGGGGATATCAGGTTGGTTTAAAGGGTGAATATTTGGAAATCTATTCACCTGAACGACAAGATGGTGCGGAATGGTCAGAAATACGAGAAGAGCCTCAAAAGAGTCCTTTCACATGGTACAAGACAGTTTTTGATGCTCCAGATGGTGACAATCCTGTAACACTGGACTTGGGGAGTATGGGAAAGGGTCAAGTTTGGGTTAATGGGAAGAGTTTAGGGAGGTATTGGCCATCCTACCTTGCACCAGATACTGGTTGTAATGCTGTATGTGATTATCGTGGAGCTTATTATGAAGATAAATGTGCAAGCAACTGCGGAAAGCCTACACAACGTTGGTACCATATTCCTCGTGCTTGGCTGCAGGAAATCAATAATCTGTTGGTTGTTTTTGAGGAGAGTGGAGGAAATCCATTGGAAATCTCAGCTGATGTACGTGTCACTCAAACCATATGTGCGGAAGTCTCTCAATCTCATCCTCCGCCGATTCGTGTCTGGTCCGATTTAATCAATTTGACAGCAGGAGGAGGAGGATACGTTAACATGTATGAATTAACAATTCCATCTCCCGAGGTGCACCTGCAATGTGATGATGGACAAGAAATCGTTTCAATCACTTTTGCCAGTTTTGGAAATCCAGAGGGACATTGTGGACAATATGTTCAAGGGACATGCCACGCAGATACCTCACATTCTGTTGTGATCCAAGCATGTCAAGGAAAGAAGAGCTGCTTAATCCCGGTGTCAACAAAGATATTTGGAGGTGATCCATGCCCAGGAACAACCGAGAAAAGGTTAGCAATTGAGGCAAATTGCATGATTGTGTCAACTGCTCCAGACAGTATTGTACAATCATATTGAGATCTTTTATCATTCTAATTAATTAATTCTGGCTCTTAAAAAGATATGCTTAACACTTGATTGTATCAAGCATTTGCAATCCAACAATGGAGTTTACCTCGCATGTGTGAAAATGTTACAGCAGATAACAAAAATCTCAACTTCAAAGTTTGCGTCTCCATCTACACTGGTAAATAGATATGAAATATCTCCATACACGACAATCTTAATGAGAAAACTTCTAGAAGTGCTCATTAAGGTCAATAATACAGATAGAAGTCTATGCATTGATAGATGTAG

Ace file of the UniGene sp_v1.1_unigene20064 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-galactosidase n=1 Tax=Persea americana RepID=Q0EDB0_PERAE	-	-	65%
FL-Next	sp=Beta-galactosidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	pear beta-galactosidase3	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	72%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	72%
Blast2go	vacuole	GO:0005773	Cellular Component	72%
Blast2go	plasma membrane	GO:0005886	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Blast2go	D-galactoside/L-rhamnose binding SUEL lectin domain	IPR000922	-	72%
Blast2go	Glycoside hydrolase, family 35	IPR001944	-	72%
Blast2go	Galactose-binding domain-like	IPR008979	-	72%
Blast2go	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	72%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	72%
Blast2go	Glycoside hydrolase, family 35, conserved site	IPR019801	-	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUR2

Fln msg: your sequence is longer than subject: 920 - 861

Fln protein: MGSIAFGTNPGGKIMRDSRGSACAFIILFVLSGSNFIAVQCLNKPFNVSYDHRAVIIDGQRRMLISAGIHYPRATPEMWPHLLSMSKEGGADVIQTYTFWNGHEPVRGQYNFAGRYDLVKFVKLVQNAGLYLHLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTDNMAFKEEMEKYVTMIVNLMKVHKLFSWQGGPIILLQIENEYGNEEHSFGEKGKRYVKWAASMAEGLDAGVPWIMCQQSDAPGNIINSCNGFYCDGFKPNAYHKPTLWTEDWNGWFSAWGGRVPHRPVEDNAFAVARFFQRGGSFHNYYMYFGGTNFGRTAGGPFYTTSYDYDAPIDEYGMLRQPKWGHLKDLHAAIKLCEPALISVDGDPQYIRFGPQQEAHVYKYSGESKVANLTVIRKTGKCAAFLANIDSHSSATVHFNGKVFHLPPWSVSILPDCKNVVFNTAKVGSQTSIVSTKRRPALSQGIFDSEILELGVKVSQLSKVWSEYKEPIGLWGEGNFSAKGILEHLNVTKDSTDYLWYTTSINISEADSAFWLVHNKYPSLVIDAVRDVVRIFVNGQIAGSSSGYWVRVEQPLNLSIGYNEIAILSELIGLQNYGAFLEKDGGGLRGSVTLQGLVSGDRNLTMACWGYQVGLKGEYLEIYSPERQDGAEWSEIREEPQKSPFTWYKTVFDAPDGDNPVTLDLGSMGKGQVWVNGKSLGRYWPSYLAPDTGCNAVCDYRGAYYEDKCASNCGKPTQRWYHIPRAWLQEINNLLVVFEESGGNPLEISADVRVTQTICAEVSQSHPPPIRVWSDLINLTAGGGGYVNMYELTIPSPEVHLQCDDGQEIVSITFASFGNPEGHCGQYVQGTCHADTSHSVVIQACQGKKSCLIPVSTKIFGGDPCPGTTEKRLAIEANCMIVSTAPDSIVQSY*

Protein Length: 921

Fln nts: ATATCCTACATGGTTAGAGATCGAGGGTTGAGTCATATTGCCATTTCTTTGTGTAGCGAGTGCATTTTAGAAGTATTGAATTGTACTGGAGTACTTGAAGA_-_ATGGGTAGCATCGCTTTTGGTACGAATCCAGGCGGTAAAATTATGAGAGATAGCAGAGGATCAGCCTGCGCTTTCATAATATTGTTTGTGTTGAGTGGAAGCAATTTCATTGCAGTACAATGTTTGAACAAGCCATTCAACGTGTCCTATGATCACCGGGCTGTTATCATAGATGGGCAAAGAAGAATGCTTATATCAGCGGGAATCCATTATCCTCGCGCTACACCCGAGATGTGGCCGCATTTGCTTTCCATGAGCAAAGAAGGCGGAGCGGATGTGATCCAGACTTACACCTTTTGGAATGGTCACGAGCCTGTTAGAGGACAGTACAATTTTGCGGGGAGATATGATCTTGTTAAATTTGTGAAGCTTGTTCAAAATGCTGGGCTTTATTTGCATCTTCGAATAGGCCCCTATGTTTGTGCAGAATGGAACTTTGGGGGATTTCCTGTTTGGTTACGAGACATCCCTGGTATTGAGTTTCGAACTGATAACATGGCATTCAAGGAGGAGATGGAGAAATATGTCACAATGATAGTGAATCTCATGAAAGTGCACAAGCTTTTTTCATGGCAAGGAGGTCCAATTATTTTACTCCAGATTGAGAACGAGTATGGGAATGAGGAACACTCATTTGGTGAGAAAGGAAAACGTTATGTAAAATGGGCTGCGAGTATGGCAGAAGGACTGGATGCAGGTGTACCTTGGATCATGTGTCAACAAAGTGATGCACCAGGGAATATTATAAATTCATGCAATGGTTTCTACTGCGATGGTTTCAAGCCAAATGCATATCACAAGCCCACTCTTTGGACCGAGGATTGGAATGGATGGTTTTCAGCTTGGGGTGGTCGGGTTCCTCATAGGCCTGTGGAAGACAATGCTTTTGCAGTAGCTCGATTTTTTCAACGTGGTGGCAGCTTTCATAATTACTACATGTATTTTGGAGGGACAAACTTTGGCCGCACAGCTGGGGGACCATTTTACACAACAAGTTATGACTATGATGCTCCAATTGATGAATATGGTATGTTGAGGCAACCTAAATGGGGGCATCTGAAGGATCTTCATGCAGCCATAAAACTCTGTGAGCCAGCTCTAATTTCTGTTGATGGAGATCCTCAGTATATACGTTTTGGTCCTCAGCAAGAGGCACATGTATATAAATATTCTGGAGAATCCAAAGTTGCAAATTTGACTGTAATTAGGAAGACAGGGAAATGTGCAGCATTTCTTGCTAATATCGATAGTCATTCTTCAGCTACTGTACATTTTAATGGAAAGGTGTTTCATCTACCACCTTGGTCTGTCAGCATATTGCCTGATTGTAAGAATGTGGTATTCAACACTGCAAAGGTTGGATCTCAAACATCCATTGTAAGCACGAAAAGGAGGCCTGCTCTTTCACAAGGAATCTTTGATTCTGAAATTTTGGAACTTGGAGTAAAAGTTTCACAATTATCAAAAGTGTGGAGTGAATATAAAGAGCCAATTGGTCTGTGGGGAGAAGGAAATTTTTCAGCAAAAGGCATATTAGAACACTTAAATGTCACCAAGGATTCTACTGATTATCTATGGTATACGACAAGCATTAATATTTCAGAAGCAGACAGTGCATTCTGGTTGGTACACAATAAATATCCATCCCTTGTCATTGATGCTGTGCGTGATGTGGTCCGTATATTTGTCAATGGTCAGATTGCAGGGAGTTCAAGTGGTTATTGGGTCCGAGTGGAGCAACCTCTGAACTTAAGTATAGGGTACAACGAAATAGCTATTCTCTCTGAATTGATTGGATTACAGAACTATGGGGCTTTCCTTGAAAAAGATGGTGGAGGCTTGAGAGGTTCTGTGACATTACAAGGCCTTGTATCAGGAGATAGAAACCTAACAATGGCATGTTGGGGATATCAGGTTGGTTTAAAGGGTGAATATTTGGAAATCTATTCACCTGAACGACAAGATGGTGCGGAATGGTCAGAAATACGAGAAGAGCCTCAAAAGAGTCCTTTCACATGGTACAAGACAGTTTTTGATGCTCCAGATGGTGACAATCCTGTAACACTGGACTTGGGGAGTATGGGAAAGGGTCAAGTTTGGGTTAATGGGAAGAGTTTAGGGAGGTATTGGCCATCCTACCTTGCACCAGATACTGGTTGTAATGCTGTATGTGATTATCGTGGAGCTTATTATGAAGATAAATGTGCAAGCAACTGCGGAAAGCCTACACAACGTTGGTACCATATTCCTCGTGCTTGGCTGCAGGAAATCAATAATCTGTTGGTTGTTTTTGAGGAGAGTGGAGGAAATCCATTGGAAATCTCAGCTGATGTACGTGTCACTCAAACCATATGTGCGGAAGTCTCTCAATCTCATCCTCCGCCGATTCGTGTCTGGTCCGATTTAATCAATTTGACAGCAGGAGGAGGAGGATACGTTAACATGTATGAATTAACAATTCCATCTCCCGAGGTGCACCTGCAATGTGATGATGGACAAGAAATCGTTTCAATCACTTTTGCCAGTTTTGGAAATCCAGAGGGACATTGTGGACAATATGTTCAAGGGACATGCCACGCAGATACCTCACATTCTGTTGTGATCCAAGCATGTCAAGGAAAGAAGAGCTGCTTAATCCCGGTGTCAACAAAGATATTTGGAGGTGATCCATGCCCAGGAACAACCGAGAAAAGGTTAGCAATTGAGGCAAATTGCATGATTGTGTCAACTGCTCCAGACAGTATTGTACAATCATATTGA___GATCTTTTATCATTCTAATTAATTAATTCTGGCTCTTAAAAAGATATGCTTAACACTTGATTGTATCAAGCATTTGCAATCCAACAATGGAGTTTACCTCGCATGTGTGAAAATGTTACAGCAGATAACAAAAATCTCAACTTCAAAGTTTGCGTCTCCATCTACACTGGTAAATAGATATGAAATATCTCCATACACGACAATCTTAATGAGAAAACTTCTAGAAGTGCTCATTAAGGTCAATAATACAGATAGAAGTCTATGCATTGATAGATGTAG

Fln Alignment:

sp_v1.1_unigene20064___NVSYDHRAVIIDGQRRMLISAGIHYPRATPEMWPHLLSMSKEGGADVIQTYTFWNGHEPVRGQYNFAGRYDLVKFVKLVQNAGLYLHLRIGPYVCAEWNFGGFPVWLRDIPGIEFRTDNMAFKEEMEKYVTMIVNLMKVHKLFSWQGGPIILLQIENEYGNEEHSFGEKGKRYVKWAASMAEGLDAGVPWIMCQQSDAPGNIINSCNGFYCDGFKPNAYHKPTLWTEDWNGWFSAWGGRVPHRPVEDNAFAVARFFQRGGSFHNYYMYFGGTNFGRTAGGPFYTTSYDYDAPIDEYGMLRQPKWGHLKDLHAAIKLCEPALISVDGDPQYIRFGPQQEAHVYKYSGESKVANLTVIRKTGKCAAFLANIDSHSSATVHFNGKVFHLPPWSVSILPDCKNVVFNTAKVGSQTSIVSTKRRPALSQGIFDSEILELGVKVSQLSKVWSEYKEPIGLWGEGNFSAKGILEHLNVTKDSTDYLWYTTSINISEADSAFWLVHNKYPSLVIDAVRDVVRIFVNGQI----AGSSSGYWVRVEQPLNLSIGYNEIAILSELIGLQNYGAFLEKDGGGLRGSVTLQGLVSGDRNLTMACWGYQVGLKGEYLEIYSPERQDGAEWSEIREEPQKSPFTWYKTVFDAPDGDNPVTLDLGSMGKGQVWVNGKSLGRYWPSYLAPDTGCNAVCDYRGAYYEDKCASNCGKPTQRWYHIPRAWLQEINNLLVVFEESGGNPLEISADVRVTQTICAEVSQSHPPPIRVWSDLINLTAGGGGYVNMYELTIPSPEVHLQCDDGQEIV-SITFASFGNPEGHCGQYVQGTCHADTSHSVVIQACQGKKSCLIPVSTKIFGGDPCPGTTEKRLAIEANC
A9NUR2_______________NVTYDHRSLLIDGQRRVLISGSIHYPRSTPEMWPDIIQKAKDGGLDVIESYVFWNMHEPKQNEYYFEDRFDLVKFVKIVQQAGLLVHLRIGPYACAEWNYGGFPVWLHLIPGIHFRTDNEPFKNEMQRFTAKIVDMMKQEKLFASQGGPIILAQIENEYGNIDGPYGAAGKSYVKWAASMAVGLNTGVPWVMCQQADAPDPIINTCNGFYCDAFTPNSPNKPKMWTENWSGWFLSFGGRLPFRPTEDLAFSVARFFQRGGTFQNYYMYHGGTNFGRTTGGPFIATSYDYDAPIDEYGIVRQPKWGHLKELHKAIKLCEAALVNAESN--YTSLGSGLEAHVYSPG-------------SGTCAAFLANSNTQSDATVKFNGNSYHLPAWSVSILPDCKNVVFNTAKIGSQTTSVQMNPANLILAGSNSMKGTD-----SANAASWSWLHEQIGIGGSNTFSKPGLLEQINTTVDSSDYLWYTTSIQVD--DNEPFLHNGTQPVLHVQSLGHALHVFINGEFAGRGAGSSSSSKIALQTPITLKSGKNNIDLLSITVGLQNYGSFFDTWGAGITGPVILQGFKDGEHDLSTQQWTYQIGLTGEQLGIYSGDTKASAQWVAGSDLPTKQPMIWYKTNFDAPSGNDPVALNLLGMGKGVAWVNGQSIGRYWPSYIASQSGCTDSCDYRGAYSSTKCQTNCGQPSQKLYHVPRSWIQPTGNVLVLFEELGGDPTQISFMTRSVGSLCAQVSETHLPPVDSWKS--SATSG-------LEVNKPKAELQLHCPSSRHLIKSIKFASFGTSKGSCGSFTYGHCNTNSTMSIVEEACIGRESCSVEVSIEKF-GDPCKGTV-KNLAVEASC

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
372			11	88	0.923564
716		7	69		1.0
718		69	23	7	1.0
719	76			23	1.0
721	7	23	69		1.0
722	23		69	7	1.0
729	7	69			1.0
760	66	33			0.997452
761	66	33			0.997452
762	66	33			0.997452
765		66		33	0.997452
1832			16	66	0.988813
1857	40			60	1.0
1917	66		33		1.0
1940	16			83	0.994512
1941		83		16	0.994512
1943	83	16			0.994512
1945	83	16			0.994512
1946	14		85		0.993533
1948	85			14	0.993533
1950			14	85	0.993533
2062		20		80	0.995493
2130	80		20		0.995493
2141		87		12	0.992554
2151	85			14	0.993533
2152		14		85	0.993533
2154		14	85		0.993533
2156			85	14	0.993533
2168	16		83		0.994512
2686		25		75	0.996473
2770		20	80		0.995493
2771		20	80		0.995493
2780		50		50	1.0
2876		33	66		0.997452
2966	33	66			1.0
3062	20	80			0.995493
3121	50		50		1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
252	264	AATT AATT AATT A	13
607	619	TCC TCC TCC TCC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain