SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20051

Length: 1747 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20051

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATEHD1; ATEHD1 (EPS15 HOMOLOGY DOMAIN 1); GTP binding / GTPase/ calcium ion binding	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	receptor-mediated endocytosis 1 isoform i	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	endocytosis	GO:0006897	Biological Process	90%
Blast2go	microsome	GO:0005792	Cellular Component	90%
Blast2go	endosome	GO:0005768	Cellular Component	90%
Blast2go	membrane	GO:0016020	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Dynamin, GTPase domain	IPR001401	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM82

Fln msg: your sequence is longer than subject: 393 - 170

Fln protein: MTPVTSIIDGLKRLYREKLKPLEVTYRYDDFGSPTMTDSDFDAKPMVMLLGQYSTGKTTFIKHLLGTSYPGSHVGPEPTTDRFIVVMSGPDGRSIPGNTIAVQADKPFSALTRFGSAFLSKFECSQMPHPLLDHFTFVDTPGVLAGEKQRTQRSYDFTGVTSWFAAKCDLILLFFDPYKLDISDEFKRVIGSLRGHDDKIRVVLNKADQVDTQHLMRVYGALMWSLGKVLSTPEVTRVYIGSFNDKPINEAALGSMAKELFEKEQEDLLVDLKDIPRKACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQRLIENLEEEFAKVQKEYHLPVGDFPDIQHYKEVLSGYQIDKFEKLKPKMIQAVDDMLGYDIPDLLKKFQNPYD*

Protein Length: 394

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGGCAGGCAGTCACGTCGTGACCTTGGGTGTCACTCAAATGACTCGTCTCCTAGATGGCAGGCACAAGCAGTTTATTGGTTTACATTCAAAAACTCAAAGAAGATACCT_-_ATGACTCCGGTGACATCAATAATTGATGGTCTGAAGAGGCTTTATCGAGAGAAATTGAAGCCATTGGAAGTCACTTATAGATACGATGATTTTGGCTCACCTACAATGACGGATAGTGACTTCGATGCAAAACCGATGGTCATGCTGTTGGGTCAATATTCTACAGGGAAGACTACATTCATCAAGCATTTACTAGGAACTAGTTATCCAGGTTCTCATGTTGGACCAGAACCCACTACAGATCGCTTTATTGTTGTAATGTCAGGTCCTGATGGAAGAAGTATACCTGGTAATACAATTGCAGTGCAAGCAGATAAGCCCTTTAGTGCACTGACCAGATTTGGCTCTGCATTTCTCTCAAAATTTGAGTGTTCACAAATGCCACATCCTCTTTTGGATCATTTTACCTTTGTAGATACACCAGGAGTTCTTGCTGGAGAAAAGCAGAGAACTCAACGCAGCTATGACTTCACCGGTGTGACTTCGTGGTTTGCAGCAAAATGTGATCTTATTCTTCTGTTTTTTGATCCTTACAAACTGGATATCAGTGATGAGTTTAAGCGTGTTATTGGATCTCTTCGTGGCCATGATGACAAGATAAGAGTGGTCCTCAACAAAGCTGATCAAGTTGATACACAACATCTAATGAGGGTATATGGAGCTTTGATGTGGTCCCTAGGGAAAGTATTGAGTACTCCTGAAGTTACAAGGGTGTACATTGGTTCATTCAATGACAAACCTATAAATGAGGCTGCTTTAGGTTCAATGGCGAAAGAGCTTTTCGAGAAAGAGCAGGAGGATCTTTTAGTTGATTTGAAAGACATTCCTAGGAAAGCATGTGATCGTCGTATAAATGAATTTGTCAAGCGCGCTCGAGCAGCCAAGATTCATGCATATATTATCAGTCATTTGAAGAAAGAGATGCCTGCTATGATGGGCAAAGCTAAGGCCCAACAACGTCTCATTGAGAATCTGGAGGAAGAGTTTGCGAAGGTGCAAAAGGAGTACCACTTGCCAGTTGGTGATTTTCCGGATATTCAACATTACAAGGAAGTTTTAAGTGGATATCAGATTGATAAATTTGAGAAGCTCAAACCAAAGATGATTCAAGCAGTGGACGATATGCTGGGCTATGACATCCCAGACCTGCTTAAAAAATTTCAGAACCCTTATGATTAA___ATGACCTATCTACATTCCTTATGATATATCACCATGATATCCCTTCCCGTGATCTGGTTTGGCAGAAGTCCTTGTCAAATCCGCAGTGTATTGCAATATGTTTCAATCATTATTGTTTTGTTGCATGGGTCACTTGTATCCTCCTCCTATCTATGTTGCTTTCCTGAATGCCAAAACAAATGCGAGCGCCTGTTGCCATATTCTTCTGGTGACCATCTTTGTCAGTGCAGAGATATTTTTAGCAACAAGGTCCAAATCTTTGGTATGTCTCTCAATAAAGGAATTTTATGTCAGATCAACAATTGGTTGGCTGCCACCTGATATATGCTCATAGATGGCCTATCCAACCCAGGGTCCCTCATTCAGTTTCGCAACCATCTTTTGTTCTCGTTATCGTAAAGACGTGGTATCTTATTAGGCTTTCAACTTTTTA

Fln Alignment:

sp_v1.1_unigene20051___MWSLGKVLSTPEVTRVYIGSFNDKPINEAALGSMAKELFEKEQEDLLVDLKDIPRKACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQRLIENLEEEFAKVQKEYHLPVGDFPDIQHYKEVLSGYQIDKFEKLKPKMIQAVDDMLGYDIPDLLKKFQNPYD
B8LM82_______________MWSLGKVLNTPEVNRVYIGSFNDKPINDVAIGPIGKDLFEKEQEDLLSDLKDIPRKACDRRINEFVKRARAAKIHAYIISHLKKEMPAMMGKAKAQQRLIDNLDEEFAKVQREYHLPAGDFPSIEHFKEVLSGYNFDKFEKIKLKMIQSVDDMLGYDIPELLRKFRNPYD

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
721		80		20	0.995493
820	71		28		1.0
1415		14	85		0.993533
1416	12			87	0.992554
1417		12		87	0.992554
1442		14	78	7	0.999974
1444	7		78		0.999974
1446		85	14		0.999981
1557		18	81		1.0
1559	81			18	1.0
1560	81			18	1.0
1561		81	18		1.0
1562	81		18		1.0
1563	81	18			1.0
1564		5	76	17	1.0
1569	76			23	1.0
1681		21	73	5	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain