SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20042

Length: 1139 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene20042 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative asparagine synthetase n=1 Tax=Pinus sylvestris RepID=Q6HA26_PINSY	-	-	92%
FL-Next	tr=Asparagine synthetase; Pinus pinaster (Maritime pine).	-	-	98%
Blast2go	asparagine synthetase	-	-	94%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular amino acid metabolic process	GO:0006520	Biological Process	0.0	94%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E7EAQ2

Fln msg: your sequence is shorter than subject: 316 - 593

Fln protein: GGINAEYLGTVHHEFHFTVQDGIDAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHMYDCLRANKSTSAWGVEARVPFLDKEFVNVAMDMDPEWKMVKPDIGRIEKWVLRKAFDDEQNPYLPKHILYRQKEQFSDGVGYSWIDGLKSHAAEHVTDTMLGNAKYIFPDNTPTTKEAYYYRMIFERFYPQNAARLTVPGGPSVACSTAKAVEWDAAWAHNLDPSGRAALGVHASAYEECNAGANDGTGNGNVDTFSKMPEREESVGAREVLIKG*

Protein Length: 317

Fln nts: ATGGGGGTATCAACGCAGAGTACCTTGGTACTGTTCATCACGAATTCCATTTCACTGTGCAGGATGGTATAGATGCAATCGAGGACGTTATATACCATGTTGAAACATACGACGTGACAACTATCAGAGCAAGCACGCCCATGTTCTTAATGTCTCGGAAAATCAAGTCGCTAGGAGTGAAGATGGTTCTGTCTGGAGAAGGATCAGATGAGATATTTGGTGGCTATTTGTACTTCCACAAGGCTCCTAACAAAGAGGAATTCCACCAGGAAACATGTCGTAAGATAAAGGCCCTTCACATGTATGATTGCTTGAGGGCTAATAAGTCGACATCTGCATGGGGTGTGGAGGCCCGTGTGCCATTTTTAGATAAGGAATTCGTCAATGTTGCCATGGACATGGATCCCGAGTGGAAGATGGTGAAGCCTGACATTGGGCGCATTGAGAAGTGGGTCTTGCGGAAGGCATTCGACGACGAGCAGAATCCTTATCTTCCCAAGCACATTCTGTACAGACAGAAGGAGCAATTCAGCGATGGGGTTGGGTACAGTTGGATTGACGGCTTAAAATCACATGCGGCAGAGCATGTGACAGATACGATGCTGGGCAATGCCAAATATATATTCCCCGACAATACTCCCACTACAAAAGAGGCATACTACTACAGGATGATATTTGAAAGATTTTATCCTCAGAACGCGGCGCGGTTGACGGTTCCGGGCGGGCCGAGCGTGGCTTGTAGCACCGCAAAGGCAGTGGAATGGGATGCTGCGTGGGCTCATAATCTGGATCCCTCCGGCAGGGCTGCTCTAGGCGTCCATGCCTCTGCGTACGAAGAGTGTAACGCAGGTGCGAATGATGGCACCGGCAATGGGAACGTCGATACATTCAGCAAGATGCCAGAAAGGGAAGAGAGTGTAGGTGCCCGCGAAGTGCTGATCAAAGGTTGA___ATTGTAAAGTATTCGTATCGACTAGGGTAGCCACGTTACTATGTAATAATCTGTACACAGAAATGGTTGGGGAAGAGTATGTCTCTGTTGTACATCAAAATGAGGGCTTGTGATTACTGTATTTCCATTGGCTGGTGTTAGTTTTCAAAGATTTCAATGTCGCAGCACTTTGTGATATTTAAAGAACGG

Fln Alignment:

sp_v1.1_unigene20042___AEYLGTVHHEFHFTVQDGIDAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHMYDCLRANKSTSAWGVEARVPFLDKEFVNVAMDMDPEWKMVKPDIGRIEKWVLRKAFDDEQNPYLPKHILYRQKEQFSDGVGYSWIDGLKSHAAEHVTDTMLGNAKYIFPDNTPTTKEAYYYRMIFERFYPQNAARLTVPGGPSVACSTAKAVEWDAAWAHNLDPSGRAALGVHASAYEECXXXXXXXXXXXXXXTFSKMPEREESVGAREVLIKG
E7EAQ2_______________AEYLGTFHHEFHFTVQDGIDAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHMYDCLRANKSTSAWGVEARVPFLDKEFVNVAMDIDPEWKMVKPDIGRIEKWVLRRAFDDEQNPYLPKHILYRQKEQFSDGVGYSWIDGLKSHAAEHVTDTMLRNAKYIFPHNTPTTKEAYYYRMIFERFYPQNAARLTVPGGPSVACSTAKAVEWDAAWAHNLDPSGRAALGVHASAYEECNAGANDGTGNGNVDTFSKMPEREESVGAREVLIKG

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
302		33		66	0.997452
306		66	33		0.997452
313	33		66		0.997452
334	66		33		0.997452
349	33		66		0.997452
352		66	33		0.997452
358	33		66		0.997452
412		33		66	0.997452
421		66		33	0.997452
424	33		66		0.997452
433		66		33	0.997452
436		33		66	0.997452
439	33	66			0.997452
811		75		25	0.996473
847	25		75		0.996473
859	75		25		0.996473
862	75		25		0.996473
898		75		25	0.996473
904	25		75		0.996473
916		50	50		1.0
919	75	25			0.996473
931	55		44		1.0
973		62		37	1.0
991		50		50	1.0
994	28		57		1.0
1003		85		14	0.993533
1009		42		57	1.0
1030	42		57		1.0
1039	85		14		0.993533
1042	57		42		1.0
1084	75			25	0.996473
1087	33		66		0.997452
1108	66		33		0.997452
1114	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain