SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene20037

Length: 1221 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene20037

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NKA9_PICSI	-	-	97%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	proteasome chain protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	peptidase activity	GO:0008233	Molecular Function	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%
Blast2go	apoplast	GO:0048046	Cellular Component	88%
Blast2go	intracellular part	GO:0044424	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	Proteasome, subunit alpha/beta	IPR001353	-	88%
Blast2go	Proteasome, beta-type subunit, conserved site	IPR016050	-	88%
Blast2go	Proteasome B-type subunit	IPR023333	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKA9

Fln msg:

Fln protein: MECVFGLVGDGFALIAGDTSAVQSIVVQKTSEDKIMILDSHKLLGASGESGDRVQFTEYIQKNVHLYQFRNGIPLSTAATANFTRGKLATALRKNPYSVNLLLAGFDKDVGPSLYYIDYIATLHKVDKVAFGYGAYFSLSMMDRYYHKGMSVEEAIEFADKCILEIRSRLIVAPPNFVIKIVDKDGAREYAWRKTIEDASEPPATELLPAVEVQS*

Protein Length: 217

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTGTTCCTTTCTGTTCAAGCAAGAGCAAACAGGAGAGATCTGCAAGGATTTGAAGCGGAGTTTGGAGTAATCGGAGGCAGTGAGTGAGCAAACCAGAGAGGAGAATAACAGAGGC_-_ATGGAGTGTGTATTCGGGTTGGTCGGGGATGGCTTCGCTCTGATAGCAGGCGACACCTCGGCAGTGCAGAGTATTGTGGTGCAAAAGACATCTGAGGACAAGATAATGATTCTCGATTCACACAAGCTTTTGGGTGCAAGCGGCGAGAGTGGTGATAGGGTACAATTTACCGAGTATATTCAGAAAAATGTTCATCTGTATCAGTTTCGTAATGGCATTCCGCTGTCTACGGCAGCTACTGCCAACTTTACCAGGGGCAAACTTGCGACAGCTCTGAGAAAGAACCCGTATTCTGTGAATTTACTTTTGGCGGGATTTGACAAGGATGTTGGTCCATCACTGTACTACATTGACTACATTGCAACTCTTCACAAGGTTGATAAAGTAGCATTTGGATATGGAGCATATTTTTCTTTATCAATGATGGACAGATATTATCACAAAGGGATGTCTGTGGAGGAGGCAATAGAGTTTGCTGACAAATGTATTTTAGAAATAAGGTCCAGATTGATAGTTGCACCTCCTAATTTTGTCATCAAGATCGTTGACAAGGATGGGGCAAGAGAGTATGCATGGCGTAAAACTATTGAGGACGCAAGTGAGCCCCCCGCAACAGAGTTGTTACCAGCTGTGGAAGTTCAAAGCTAA___ATGATTGGTTTATAATTGAAATAGCATTGTTACCCTAAACACATTTTTATGCTAGTTTCCAATATCTAAGAGTTCCTTTGCAGCAAGATTGGAAATTTTGCTTTTGGTACACTTTCAAAACAAATTAATAATCTGATATAGCTTTTAAATCTCCAGAAACCAGAATTATCAGTCTGGAAATTTTATAAGTGATCGGATTATTTCATGTCAGTTTCTTCTGCATTTTTAAGTTTAGATTTTTAAGATTTCCGTTATGAGCACATTTTCAAGCAGAGCTTCATTGTATTTGAGAAAGCATTCATTTTGTTCCTGTCTTTCTGAGTTGCATTACATGTTAATGTGGATGCCGGATTAAAGATCTGGAGCTAAGATACCAATTGACTAAGAAATTGAGAAGGTCATCTAGGTATTTTGGATGGTGCATTATTATCT

Fln Alignment:

sp_v1.1_unigene20037___MECVFGLVGDGFALIAGDTSAVQSIVVQKTSEDKIMILDSHKLLGASGESGDRVQFTEYIQKNVHLYQFRNGIPLSTAATANFTRGKLATALRKNPYSVNLLLAGFDKDVGPSLYYIDYIATLHKVDKVAFGYGAYFSLSMMDRYYHKGMSVEEAIEFADKCILEIRSRLIVAPPNFVIKIVDKDGAREYAWRKTIEDASEPPATELLPAVEVQS
A9NKA9_______________MECVFGLVGDGFTLIAGDTSAVQSIVVQKTSEDKIMILDSHKLLGASGESGDRVQFTEYIQKNVHLYQFRNGIPLSTAATANFTRGELATALRKNPYSVNLLLAGFDKDVGPSLYYIDYIATLHKVDKVAFGYGAYFALSMMDRYYHKGMSVEEAIEFADKCILEIRSRLIVAPPNFVIKIVDKDGAREYGWRKTIEDASEPPAAELLPAVEVQS

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
13		20	80		0.995493
15		80		20	0.995493
16		20		80	0.995493
19		80	20		0.995493
24	20			20	0.99255
25	80			20	0.995493
27			20	80	0.995493
28		20		80	0.995493
32		14		85	0.993533
33	14	85			0.993533
36		14		85	0.993533
37	14			85	0.993533
38	71	28			1.0
51	28	71			1.0
229	33		66		1.0
230	50		33		1.0
1079			76	23	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain