SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19973

Length: 728 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19973

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Prolyl 4-hydroxylase alpha subunit, putative n=1 Tax=Ricinus communis RepID=B9SUL3_RICCO	-	-	8.0e-18	76%
FL-Next	tr=Putative prolyl 4-hydroxylase, alpha subunit; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	63%
Blast2go	protein	-	-	1.34948e-17	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Procollagen-proline dioxygenase.	EC:1.14.11.2	-	1.34948e-17	78%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Arginine and proline metabolism	00330		1.34948e-17	78%
Blast2go	Metabolic pathways	01100		1.34948e-17	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	GO:0018401	Biological Process	1.34948e-17	78%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	1.34948e-17	78%
Blast2go	L-ascorbic acid binding	GO:0031418	Molecular Function	1.34948e-17	78%
Blast2go	iron ion binding	GO:0005506	Molecular Function	1.34948e-17	78%
Blast2go	procollagen-proline 4-dioxygenase activity	GO:0004656	Molecular Function	1.34948e-17	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	1.34948e-17	78%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
136		14	85		0.993533
137	14		85		0.993533
251		90		10	0.90298
343	83		16		0.994512
411		50	50		1.0
427		75		25	0.996473
687	33	66			0.997452
724	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain