SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19969

Length: 3513 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19969
CGTCGTGACCTTGGCTGTCACTCAGAGTGTTTCATCGAGATTCATGATTTGGAAAATTGAATTAGGGTCGCTATAAATTTACTCAACCATATAAAATCCCATGATAGATGATAGAGTAGCAGAGTGAGTTTTCTCGTGTAATCTCCCCTCTCATTACAGAGACGAGGAGTACTCCGAAATCGACTTGACACCATTGATTGAACGGCAATGGCGCTTGCTCAGCCCCTGGTGAAGAAGGACGATGATCGAGATGACGAAGCGGAATACTCTCCCTTTCTTGGGATCGAAAAGGGAGCAGTCCTGCAGGAAGCTCGCGTTTTCAATGATCCTCAACTCGATGCAAGGAGATGTGCCCAGGTCATCACAAAGCTTTTATATTTAATTAATCAAGGAGAGACTTTCACGAAGGTTGAAGCTACAGAAGTTTTCTTTGCTGTCACAAAGCTTTTTCAGTCTAAGGACACTGGCTTGAGGAGAATGGTTTATTTGATCATCAAGGAGCTTTCTCCTTCTGCCGATGAGGTTATTATTGTGACAAGTTCATTAATGAAAGACATGAATAGCAAGACAGATATGTATCGGGCCAATGCAATACGAGTTTTATGCAGGATCACAGATGGGGCCTTGTTGGGTCAGATTGAAAGATATCTTAAACAAGCTATTGTTGACAAGAATCCTGTTGTAGCCAGTGCTGCCCTTGTCAGTGGAATTCACTTGCTTCAGACCAATCCTGAGATTGTGAGACGATGGAGTAATGAGGTCCAGGAAGCAGTCAATTCCCGAGCTGCTCTTGTACAATTTCATGCACTAGGCTTACTTCACCAGATTCGACAAAATGACCGTTTGGCTGTGAGCAAGCTGGTGTCCAGTTTAACCAGAGGATCAGTTCGTTCACCTTTAGCTCAATGTCTTTTGATCCGTTACACCAGTCAGGTTATACGAGAATCGAGTTTAAATACACAAGCACCTGATCGCCCTTTCTATGACTACCTGGAGGGTTGTTTGCGTCACAAAGCAGAAATGGTCATATTTGAAGCTGCAAGAGCTATAACGGAGTTGAGTGGAGTGACCAGTCGAGAGTTGACTCCAGCTATCACTGTCTTGCAGCTGTTTTTAAGCTCATCAAAGCCAGTTCTCCGGTTTGCAGCTGTTCGTACGCTAAACAAGGTAGCAATGACACATCCATTGGCAGTTACAAACTGCAATATTGATATGGAGAGCCTGATATCAGATCAAAACCGGAGCATAGCCACTCTGGCTATTACTACACTGTTGAAAACAGGAAATGAGTCGAGTGTGGATCGTTTGATGAAGCAAATCACGAATTTTATGTCAGATATAGCGGATGAGTTCAAGATTGTTGTTGTAGAAGCTATTCGATCTCTGTGCTTAAAGTTCCCACAGAAGTATCGAACACTAATGAACTTTCTAAGTAATATACTTAGAGAAGAAGGTGGATTTGAATATAAGAAAGCTATTGTGGACTCTATTCTTATTCTCATTCGAGATATCCCAGAAGCAAAAGAAAGTGGCTTGTCTCATCTTTGTGAATTCATTGAAGATTGTGAATTTACTTATCTTTCTACACAAATTCTTCATTTTCTTGGTAATGAAGGACCAAAGACCGCAGATCCTAGCAAGTATATTCGTTACATTTATAATCGAGTTATTCTTGAAAATGCAACGGTTAGGGCAAGTGCTGTAAGTGCACTAGCAAAGTTTGGGGCACTGGTTGAGTCTCTAAAGCCTCGCATATTTGTATTGTTGCGGCGGTGTCTCTTTGACAATGACGATGAGGTTCGGGACCGAGCAACACTTTACCTAAATGCTCTTGGTGGTGATGTTTCTTCTGATAATGATGGAAGGGATTTGAAAGAGTTCATTTATGGTACCTTACACTTGCCACTAGTTAACCTTGAAGCAAGTTTACAGGCTTATGAGGCTAGCGAAGAACCTTTCAACCTGTCTGCTGTTCCAAAAGAGGTTAAATCACAGCCCTTGGCAGAGAAGAAAGCCCCTGGCAAAAAGGCAGCAGCAACAAATGTTGGGCCCACTACTGTCACTTCAATTGGAGAAACATATGAAAAATTACTCGCCTCAATCCCTGAGTTTTCAGAATTTGGAAAACTTTTCAAGTCTTCCCCACCTGTGGAGCTGACTGAGGCAGAGACAGAATATGCAGTGAACGTTGTGAAGCACATATTTTCTAACCATGTTGTGCTCCAGTATAACTGCACAAACACTATACCAGAACAAGTTTTGGAAAATGTTCATGTAATAGTAGATGCATCCGAGGCAGAAGAATTTTCTGAAGTGGTATCTAAACCTCTAAAATCATTGCCTTATGACTCACCCGGACAGACTTTTGTGGCATTTGAAAAACCAGAAGGAGCTTTGTCTACTGGAAAATTTTCAAATATGCTGAAATTTGTTGTGAAGGAGGTTGATCCTGCTACTGGTGATGTAGAAGAGGAGGGAGTTGAAGATGAATATCAACTTGAGGACCTAGAGGTGACTCCAGCTGATTACATATTGAAGGTTGGAGTTTCAAATTTCAAAAATGCGTGGGAGTCCTTAGGGGCAGACTTTGAACGTGTTGATGAGTATGGTCTTGGTGTGAGGGATAGCTTGTCAGAGGCTGTACAGGCAGTAATCAGTCTTCTTGGAATGCAGGCTTGTGAGGGTACTGATGTTGTCTCAAGCAATTCACGTTCACACACTTGCCTATTGGCTGGTAGATTCATTGGCAATGTTCAAGTACTAGTTAGACTGTCGTTTGGCATTGATGGACCTAAACAAGTTGCTATGAAGCTTGCAGTGCGGTCGGAAGACCAATTTGTAAGTGATGCCATACATGAAATTGTTGCTAATGGCTAAGGGTGCAGATATCTTTCATCATTCCAAGCCGTTGGTTGATGAAGAAAATGCAAATACATTTGCTCTATCTGGTAGATATTTCCACTACCATATCGATTTTCCATAGTGTGCTAACTTAAGCACCTCCCCGAGAATATGCTTGTAGTGCGAATCATGCATTTTATTTCTGAGTTTATCCCAAATGGTGTTTCAAATAACCTGTGGAGGGCAGGTTAAAGCTATAGCTTCTTAGTACTTATTGATTCGTTTCATTTATGTTTTCCTTTTTAATATTGAAAGTGGGTTTTGAAGGAACAAAATGCTAACAATGCTGATGATTTTACCCTGAAGGGGTTTGTTCCATTTGAGGTTTTTTGTAACAGTACATCATTCAAAGAGCTAGAGATGTAAGACTCTTGATATGGCACATAAAAAGAGCTCTAGATCTGTAAGACTCTGGTATGAATTTTTCATATTTTACAGAACTTGTGGCATATTTAGTGGCAATAATTTTCTCTGAAGTTATTTGTTCGTTACATGGCATCAGAGTTAGTATATTTACAAATATTTGATATTACATGATTTCGTGATAACCTAGGACATCATATCCTCTGTATCTAATAATAATTTGATATTTCATGATTTATTGATAACTCA

Ace file of the UniGene sp_v1.1_unigene19969

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coatomer gamma subunit, putative	-	-	80%
FL-Next	sp=Coatomer subunit gamma-2; Oryza sativa subsp. japonica (Rice).	-	-	82%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	89%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	89%
Blast2go	clathrin binding	GO:0030276	Molecular Function	89%
Blast2go	structural molecule activity	GO:0005198	Molecular Function	89%
Blast2go	chloroplast	GO:0009507	Cellular Component	89%
Blast2go	COPI vesicle coat	GO:0030126	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Clathrin/coatomer adaptor, adaptin-like, N-terminal	IPR002553	-	89%
Blast2go	Coatomer/calthrin adaptor appendage, C-terminal subdomain	IPR009028	-	89%
Blast2go	Armadillo-like helical	IPR011989	-	89%
Blast2go	Coatomer, gamma subunit, appendage, Ig-like subdomain	IPR013040	-	89%
Blast2go	Coatomer/clathrin adaptor appendage, Ig-like subdomain	IPR013041	-	89%
Blast2go	Coatomer, gamma subunit , appendage	IPR014863	-	89%
Blast2go	Clathrin alpha-adaptin/coatomer adaptor, appendage, C-terminal subdomain	IPR015873	-	89%
Blast2go	Armadillo-type fold	IPR016024	-	89%
Blast2go	Coatomer gamma subunit	IPR017106	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q6Z382

Fln msg:

Fln protein: MALAQPLVKKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDARRCAQVITKLLYLINQGETFTKVEATEVFFAVTKLFQSKDTGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGALLGQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVRRWSNEVQEAVNSRAALVQFHALGLLHQIRQNDRLAVSKLVSSLTRGSVRSPLAQCLLIRYTSQVIRESSLNTQAPDRPFYDYLEGCLRHKAEMVIFEAARAITELSGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPQKYRTLMNFLSNILREEGGFEYKKAIVDSILILIRDIPEAKESGLSHLCEFIEDCEFTYLSTQILHFLGNEGPKTADPSKYIRYIYNRVILENATVRASAVSALAKFGALVESLKPRIFVLLRRCLFDNDDEVRDRATLYLNALGGDVSSDNDGRDLKEFIYGTLHLPLVNLEASLQAYEASEEPFNLSAVPKEVKSQPLAEKKAPGKKAAATNVGPTTVTSIGETYEKLLASIPEFSEFGKLFKSSPPVELTEAETEYAVNVVKHIFSNHVVLQYNCTNTIPEQVLENVHVIVDASEAEEFSEVVSKPLKSLPYDSPGQTFVAFEKPEGALSTGKFSNMLKFVVKEVDPATGDVEEEGVEDEYQLEDLEVTPADYILKVGVSNFKNAWESLGADFERVDEYGLGVRDSLSEAVQAVISLLGMQACEGTDVVSSNSRSHTCLLAGRFIGNVQVLVRLSFGIDGPKQVAMKLAVRSEDQFVSDAIHEIVANG*

Protein Length: 891

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGTGTTTCATCGAGATTCATGATTTGGAAAATTGAATTAGGGTCGCTATAAATTTACTCAACCATATAAAATCCCATGATAGATGATAGAGTAGCAGAGTGAGTTTTCTCGTGTAATCTCCCCTCTCATTACAGAGACGAGGAGTACTCCGAAATCGACTTGACACCATTGATTGAACGGCA_-_ATGGCGCTTGCTCAGCCCCTGGTGAAGAAGGACGATGATCGAGATGACGAAGCGGAATACTCTCCCTTTCTTGGGATCGAAAAGGGAGCAGTCCTGCAGGAAGCTCGCGTTTTCAATGATCCTCAACTCGATGCAAGGAGATGTGCCCAGGTCATCACAAAGCTTTTATATTTAATTAATCAAGGAGAGACTTTCACGAAGGTTGAAGCTACAGAAGTTTTCTTTGCTGTCACAAAGCTTTTTCAGTCTAAGGACACTGGCTTGAGGAGAATGGTTTATTTGATCATCAAGGAGCTTTCTCCTTCTGCCGATGAGGTTATTATTGTGACAAGTTCATTAATGAAAGACATGAATAGCAAGACAGATATGTATCGGGCCAATGCAATACGAGTTTTATGCAGGATCACAGATGGGGCCTTGTTGGGTCAGATTGAAAGATATCTTAAACAAGCTATTGTTGACAAGAATCCTGTTGTAGCCAGTGCTGCCCTTGTCAGTGGAATTCACTTGCTTCAGACCAATCCTGAGATTGTGAGACGATGGAGTAATGAGGTCCAGGAAGCAGTCAATTCCCGAGCTGCTCTTGTACAATTTCATGCACTAGGCTTACTTCACCAGATTCGACAAAATGACCGTTTGGCTGTGAGCAAGCTGGTGTCCAGTTTAACCAGAGGATCAGTTCGTTCACCTTTAGCTCAATGTCTTTTGATCCGTTACACCAGTCAGGTTATACGAGAATCGAGTTTAAATACACAAGCACCTGATCGCCCTTTCTATGACTACCTGGAGGGTTGTTTGCGTCACAAAGCAGAAATGGTCATATTTGAAGCTGCAAGAGCTATAACGGAGTTGAGTGGAGTGACCAGTCGAGAGTTGACTCCAGCTATCACTGTCTTGCAGCTGTTTTTAAGCTCATCAAAGCCAGTTCTCCGGTTTGCAGCTGTTCGTACGCTAAACAAGGTAGCAATGACACATCCATTGGCAGTTACAAACTGCAATATTGATATGGAGAGCCTGATATCAGATCAAAACCGGAGCATAGCCACTCTGGCTATTACTACACTGTTGAAAACAGGAAATGAGTCGAGTGTGGATCGTTTGATGAAGCAAATCACGAATTTTATGTCAGATATAGCGGATGAGTTCAAGATTGTTGTTGTAGAAGCTATTCGATCTCTGTGCTTAAAGTTCCCACAGAAGTATCGAACACTAATGAACTTTCTAAGTAATATACTTAGAGAAGAAGGTGGATTTGAATATAAGAAAGCTATTGTGGACTCTATTCTTATTCTCATTCGAGATATCCCAGAAGCAAAAGAAAGTGGCTTGTCTCATCTTTGTGAATTCATTGAAGATTGTGAATTTACTTATCTTTCTACACAAATTCTTCATTTTCTTGGTAATGAAGGACCAAAGACCGCAGATCCTAGCAAGTATATTCGTTACATTTATAATCGAGTTATTCTTGAAAATGCAACGGTTAGGGCAAGTGCTGTAAGTGCACTAGCAAAGTTTGGGGCACTGGTTGAGTCTCTAAAGCCTCGCATATTTGTATTGTTGCGGCGGTGTCTCTTTGACAATGACGATGAGGTTCGGGACCGAGCAACACTTTACCTAAATGCTCTTGGTGGTGATGTTTCTTCTGATAATGATGGAAGGGATTTGAAAGAGTTCATTTATGGTACCTTACACTTGCCACTAGTTAACCTTGAAGCAAGTTTACAGGCTTATGAGGCTAGCGAAGAACCTTTCAACCTGTCTGCTGTTCCAAAAGAGGTTAAATCACAGCCCTTGGCAGAGAAGAAAGCCCCTGGCAAAAAGGCAGCAGCAACAAATGTTGGGCCCACTACTGTCACTTCAATTGGAGAAACATATGAAAAATTACTCGCCTCAATCCCTGAGTTTTCAGAATTTGGAAAACTTTTCAAGTCTTCCCCACCTGTGGAGCTGACTGAGGCAGAGACAGAATATGCAGTGAACGTTGTGAAGCACATATTTTCTAACCATGTTGTGCTCCAGTATAACTGCACAAACACTATACCAGAACAAGTTTTGGAAAATGTTCATGTAATAGTAGATGCATCCGAGGCAGAAGAATTTTCTGAAGTGGTATCTAAACCTCTAAAATCATTGCCTTATGACTCACCCGGACAGACTTTTGTGGCATTTGAAAAACCAGAAGGAGCTTTGTCTACTGGAAAATTTTCAAATATGCTGAAATTTGTTGTGAAGGAGGTTGATCCTGCTACTGGTGATGTAGAAGAGGAGGGAGTTGAAGATGAATATCAACTTGAGGACCTAGAGGTGACTCCAGCTGATTACATATTGAAGGTTGGAGTTTCAAATTTCAAAAATGCGTGGGAGTCCTTAGGGGCAGACTTTGAACGTGTTGATGAGTATGGTCTTGGTGTGAGGGATAGCTTGTCAGAGGCTGTACAGGCAGTAATCAGTCTTCTTGGAATGCAGGCTTGTGAGGGTACTGATGTTGTCTCAAGCAATTCACGTTCACACACTTGCCTATTGGCTGGTAGATTCATTGGCAATGTTCAAGTACTAGTTAGACTGTCGTTTGGCATTGATGGACCTAAACAAGTTGCTATGAAGCTTGCAGTGCGGTCGGAAGACCAATTTGTAAGTGATGCCATACATGAAATTGTTGCTAATGGCTAA___GGGTGCAGATATCTTTCATCATTCCAAGCCGTTGGTTGATGAAGAAAATGCAAATACATTTGCTCTATCTGGTAGATATTTCCACTACCATATCGATTTTCCATAGTGTGCTAACTTAAGCACCTCCCCGAGAATATGCTTGTAGTGCGAATCATGCATTTTATTTCTGAGTTTATCCCAAATGGTGTTTCAAATAACCTGTGGAGGGCAGGTTAAAGCTATAGCTTCTTAGTACTTATTGATTCGTTTCATTTATGTTTTCCTTTTTAATATTGAAAGTGGGTTTTGAAGGAACAAAATGCTAACAATGCTGATGATTTTACCCTGAAGGGGTTTGTTCCATTTGAGGTTTTTTGTAACAGTACATCATTCAAAGAGCTAGAGATGTAAGACTCTTGATATGGCACATAAAAAGAGCTCTAGATCTGTAAGACTCTGGTATGAATTTTTCATATTTTACAGAACTTGTGGCATATTTAGTGGCAATAATTTTCTCTGAAGTTATTTGTTCGTTACATGGCATCAGAGTTAGTATATTTACAAATATTTGATATTACATGATTTCGTGATAACCTAGGACATCATATCCTCTGTATCTAATAATAATTTGATATTTCATGATTTATTGATAACTCA

Fln Alignment:

sp_v1.1_unigene19969___LAQPLV-KKDDDRDDEAEYSPFLGIEKGAVLQEARVFNDPQLDARRCAQVITKLLYLINQGETFTKVEATEVFFAVTKLFQSKDTGLRRMVYLIIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRITDGALLGQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVRRWSNEVQEAVNSRAALVQFHALGLLHQIRQNDRLAVSKLVSSLTRGSVRSPLAQCLLIRYTSQVIRESSLNTQAPDRPFYDYLEGCLRHKAEMVIFEAARAITELSGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVAMTHPLAVTNCNIDMESLISDQNRSXXXXXXXXXXKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPQKYRTLMNFLSNILREEGGFEYKKAIVDSILILIRDIPEAKESGLSHLCEFIEDCEFTYLSTQILHFLGNEGPKTADPSKYIRYIYNRVILENATVRASAVSALAKFGALVESLKPRIFVLLRRCLFDNDDEVRDRATLYLNALGGDVSSDNDGRDLKEFIYGTLHLPLVNLEASLQAYEASEEPFNLSAVPKEVKSQPLXXXXXXXXXXXXTNVGPTT-----VTSIGETYEKLLASIPEFSEFGKLFKSSPPVELTEAETEYAVNVVKHIFSNHVVLQYNCTNTIPEQVLENVHVIVDXXXXXXXXXXXXKPLKSLPYDSPGQTFVAFEKPEGALSTGKFSNMLKFVVKEVDPATXXXXXXXXXXXYQLEDLEVTPADYILKVGVSNFKNAWESLGADFERVDEYGLGVRDSLSEAVQAVISLLGMQACEGTDVVSSNSRSHTCLLAGRFIGNVQVLVRLSFGIDGPKQVAMKLAVRSEDQFVSDAIHEIVANG
Q6Z382_______________MAQPLVVKKDDDLDEEEYYSPFLGIEKGAVLQEARVFHDPQLDARRCCQVITKLLYLLNQGDTFTKVEATEVFFATTKLFQSKDAGLRRMVYLMIKELSPSADEVIIVTSSLMKDMNSKTDMYRANAIRVLCRIIDSTLLTQIERYLKQAIVDKNPVVASAALVSGIYLLQTSPEVVKRWSNEVQEAVQSRAALVQFHALALLHQIRQNDRLAVSKLVTSLTRGSVRSPLAQCLLIRYTSQVIRESSMNSQGGDRPFFDFLESCLRNKAEMVILEAARAITELNGVTSRELTPAITVLQLFLSSSKPVLRFAAVRTLNKVASTHPLAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQMTNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFEYKKAIVDSIIILIRDIPDAKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIRYIYNRVILENATVRASAVSTLAKFGALVDSLKPRIFVLLRRCLFDGDDEVRDRATLYLKLLGGEATVGETEKDVNEFLFGSFDIPLVNLETSLQNYEPSEAPFDISSVSLETKSQPLAEKKTTGKKP----TGPASALSGPVPTVDASYEKLLSSIPEFAGFGKLFKSSAPVELTEAETEYSVNVVKHIYDGHVVLQYNCTNTIPEQLLEEVVVFVDASEADEFSEVATKSLRSLPYDSPGQTFVAFEKLEGVLATGKFSNILKFIVKEVDPSTGEADDDGVEDEYQLEDLEITSADYMLKVGVSNFRNAWESMDPESERVDEYGLGARESLAEAVSAVIGILGMQPCEGTDVVPSNSRSHTCLLSGVFIGNVKVLVRLSFGLSGPKEVAMKLAVRSDDPEISDKIHEIVANG

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
131	16			83	0.994512
132		16		83	0.994512
149	50	50			1.0
157	66	33			1.0
175	50	50			1.0
357	85		14		0.993533
983	5	10		85	0.999793
988		90	10		0.999898
990	85		15		1.0
991	10	90			0.999898
993	10			89	0.999919
996	89	10			0.999919
997		11	88		0.999937
1137			11	88	0.923564
1139	10	90			0.90298
1142	10			90	0.90298
1143			10	90	0.90298
1150		10		90	0.90298
1189		11	88		0.923564
1192	87		12		0.992554
1195			12	87	0.992554
1197		87	12		0.992554
1198	87			12	0.992554
1199	87		12		0.992554
1279	75		25		0.996473
1280	75		25		0.996473
3237	88		11		0.923564
3398	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain