SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19950

Length: 1050 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19950

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycosyl transferase family 29 protein / sialyltransferase family protein	-	-	61%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	62%
Blast2go	sialyltransferase-like protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	sialyltransferase activity	GO:0008373	Molecular Function	72%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%
Blast2go	membrane	GO:0016020	Cellular Component	72%

Full-Lengther Next Prediction

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
298	22			77	0.999999
319	90		10		0.90298
320			90	10	0.90298
322			10	90	0.90298
329	90	10			0.90298
332			10	90	0.90298
334		11	88		0.923564
335	88			11	0.923564
336	87		12		0.992554
337	87			12	0.992554
338		12	87		0.992554
549	85	14			0.993533
550			14	85	0.993533
553		85		14	0.993533
554	85		14		0.993533
555	14			85	0.993533
559	85			14	0.993533
561	85		14		0.993533
562	85	14			0.993533
565	80			20	0.995493
566	80	20			0.995493
568	80	20			0.995493
569			80	20	0.995493
570		20	80		0.995493
571	20		80		0.995493
595		16	83		0.994512
605	83	16			0.994512
606	83			16	0.994512
610		83	16		0.994512
611		66		33	1.0
616	83	16			0.994512
617	16	83			0.994512
778			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain