SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19934

Length: 655 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19934

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Spore coat protein-like protein; 24980-21957 n=5 Tax=Arabidopsis RepID=Q9C9A4_ARATH	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	spore coat protein	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	74%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	74%
Blast2go	meristem maintenance	GO:0010073	Biological Process	74%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	74%
Blast2go	copper ion binding	GO:0005507	Molecular Function	74%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	74%
Blast2go	membrane	GO:0016020	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cupredoxin	IPR008972	-	0.0	74%

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
83	12	75	12		0.975346
89		12		87	0.992554
124			16	83	0.994512
189		20		80	0.995493
206			83	16	0.994512
238		16		83	0.994512
272	80			20	0.995493
273	80			20	0.995493
289	20	80			0.995493
319		80		20	0.995493
337			80	20	0.995493
340			40	60	1.0
346	20		80		0.995493
425	25		75		0.996473
438		25	75		0.996473
442	20		80		0.995493
457		80		20	0.995493
483	25	75			0.996473
495		25	75		0.996473
530	75		25		0.996473
543	25			75	0.996473
559	50		25		0.995533
560	50	25		25	0.995533
563		75		25	0.996473
572		66	33		0.997452
583		66	33		0.997452
627		66		33	0.997452
636		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain