SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19925

Length: 3346 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19925
CGTCGTGACCTTGGCTGTCACTCAGCAGAGGCATTCTTGAAGAAGACTCAGGACGTTTAACATAATCTGAGCTTTCTGGTTTTCGTGTCTTTGAAGAGTTGGGTGATCTGAGAACAGAGAGAATGGGCAGGGCTCGGGTTCGACCCTCGCCCGCGGCGACCCTGGCATTGTTTCTGGGTGCCATGAGCTTCTTGTGGGCGACCCCGCATCCACTGAGCAATGGCTTCATCCCCGCGGATGATATACATTTGAGCTGCGGTGCCTCAGGCAACCAGAAGGACTCAGACGGGCGGACTTGGGTGACCGACAAGGGCTCCAAATTTGCTCCGCCCGACTTGTCCAATTCTTTCTCAGAGACCGCCTCCTCACAGAGCCCTTCACTCCCCTCGACGGTCCCTTACATGACCGCTCGGATTTTCAAAGCCCCGGCCACATATTCCATCGCCGTTTCGCCGGGGCGACATTGGTTGAGGCTGTACTTCTACCCGTCCAACTACGGATCCTACCAGGCTACCGACGCGCTCTTCAATGTTGAGGCTAATTCCTACACGCTTCTTCACAACTTCAGCTCTGGGCAGACGGCCGACGTCCTGAACATGGCCTCGTTGCTCTATGAATACTCCATCAACGTGACCTCCAACAAGTTGAACATCACATTTTCACCAGAGAACCCGAGTTCATACGCCTTCGTCAATGGCATCGAGGTCGAATCGATGCCCAATCTCTTCGATGTAGACCCGTTACTGGTCGGGGTCGGCGCCAGTGCGACGTTTCCCATTGGTTCTTCCTATGTTTTGCAGACCATGTACAGGCTCAACGTGGGCGGGCAAAGTATTGGCCCAAGCGGGGACTCGAACCTGAGCCGGACCTGGTATGACGACACGCCTTATCTCTACGGCGCGGCCAGCGGCGTAACCTTGAGCAACGACACCAACGTGCACTACACGGCGAGTGATCCCGATTACTCCGCCCCGCAGGCGGTCTACCAATCCTTCAGATCCATGACTTTAAACTCAGAACTGAACTTGAATTCCAATTTAACGTGGATGTTGACGGCCAACGCGAATTTTACATACCTGGTCCGGCTTCATTTCTGCGAGTGGATTTACACTCTGCCGAATCAGAGGGTTTTTGATATTTATGTTAATAATCAGACTGCAGTTGAGGAATTTGATGTGATTGGAAGCGGTGTCACCGCAGGCACTGCTATGTACAGCGATTTTGTAAGTAGTCTCTCAGCGCAGTCGGACGGTAATTTCTGGGTAGCTTTACATCCTGATGCTGGCTCTAAACCTCAATATTATAATGCCCTTTTAAATGGGTTGGAACTGTTCAAGATTAACGATAGCTCGGGGAATCTGGCAGGGCCGAATCCAGTGGCCGCTGCTCCAGTGAATTACCAGGGTCCTGGTTCTAATGTGACTCCTCCTTCAAGTTCTAGCAGCAGCAGCAGCAAAGGTAAGGGTCCTGTGATTGGGGGAGTTGCTGGAGGGATTGCTGCACTAGCACTTCTTCTTGCTATCTGCTGCTTTGTTCGTCAACGCCGTAGTGGGTCAGCTGGTGACAAGCACCCTGGATGGTTGCCTCTACCACTCTATGGTGGTAACTCACACACCATTGGGAGCAAAGTTTCAACTACTTCTGGAAAGAGTGGTACTGGGAGCTATGTGTCATCTGCACCTTCCAGTTTTTGCAGACATTTTAGCTTTGCAGAGATACAAGAGGCTACCAAAAACTTTGATGAGTCGCGAATTCTTGGTGTTGGTGGTTTTGGGAAAGTTTATGAAGGAGAGATTGATGGTGGTGGTGTCAAGGTTGCAGTTAAGAGAGGAAACCCACTAGCAGAACAAGGTATCCATGAATTCCAAACAGAAATAGAGATGCTTTCTAAGCTCAGGCATCGCCATTTGGTGTCTCTTATTGGTTACTGCGAAGAAAATTGTGAGATGATTTTAGTTTATGATTACATGGCCAAGGGACCACTACGAGGACACTTGTATGGTAACAGCAATTTGACTCCTTTGTCATGGAAGCAAAGATTAGAAATCTGTATTGGGGCTGCTCGAGGTCTTCATTATCTTCACACAGGGGCTGCTCAGACCATCATACATCGGGATGTCAAGACCACAAATATACTTATTGATGAAAACTTAGTTGCAAAAGTTTCAGATTTTGGATTATCAAAAATGGGCCCAACTCTTGACCATACTCATGTTAGCACTGTGGTCAAAGGTAGCTTTGGATACCTGGACCCAGAATATTATCGTAGGCAGCAGCTCACTGAAAAGTCAGATGTTTATTCATTTGGTGTTGTGTTGTTTGAGGTGTTGTGTGCTCGACCTGCTATTAATCCATCTCTTCCTAGAGAACAGGTAAGCATTGCTGAATGGGCACTGCATTACCAGAGAAAGGGAATTCTGGAACAAATTATAGATCCTTATTTGAAAGGTAAAATAAATCCCGAGTCCCTTAAGAAGTATGGTGAGGCAGCTGAAAAATGTCTTGCCGAGCAAGGGGTTGAAAGGCCAGCTATGGGAGACGTGCTTTGGAACCTAGAATTTGCTTTGCAGCTCCAAGAAACTGCAATTGAGAATAAACTGGTTGATGACAGTACGAATAACTTTGTGGAAATCTCTCCTGACCACAACTCAAACAACATAGAAACTTATGCCGTTGATGGACCCAGCACTGTGACAAGCACCGGAGGCCATAGTTTGGCAAGTGAGGATTTGGATGATGTAACTCCAAGTGCCGTTTTTTCACAACTGGTGAATCCACAAGGGAGGTAATTGAATTGGCAGGTAGTACATTCATGTTTCTGCATTTGTTGTAGTACATGCAGCCAGCAAGTTGCACAAAAGATGGCACCAATAGTCAGGTAATTGAAAATTTTCTGTGCTTTATAAAATACCTAATTTAATATCATATTCATGGCCTCTAAAGTGGTTGTTGTTAATATTCAAATCCTTCAATGGGATAGACAGTTGTGAGGGTTCGTTTGCATTCTTTTTGAATGTTATATGCGAACTACTGTAATTAGCTTCCTTTATTGCACATTTGTATCGTGATACTGGACATAATGTTTCCAAGATCTCAAAATGGTTGCTTAGGTGGGAAATCATTTGTTTGTAGGAATTTAGGAAAGGAAGTAATCCTCCTGCAAAACATCAAATTGTATGTGATTGTAGAATTCAGTAATTTTGATGGAGTGTATTCTCCGTTATCTAGCATTTATGCTAATATGAGAAAGGGTGGATATCTAAGCCAATTCTCATTATATCGTATCTGCTTCTGCTGTTTACTGAAATAAGAAGGTGCTTTCACATTTCTAAATTAGAATTATACC

Ace file of the UniGene sp_v1.1_unigene19925

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	FER; FER (FERONIA); kinase/ protein kinase	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	feronia receptor-like kinase	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	69%
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-tyrosine kinases.	EC:2.7.10.-	-	0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	pollen tube reception	GO:0010483	Biological Process	69%
Blast2go	post-embryonic development	GO:0009791	Biological Process	69%
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	69%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	69%
Blast2go	protein tyrosine kinase activity	GO:0004713	Molecular Function	69%
Blast2go	ATP binding	GO:0005524	Molecular Function	69%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	69%
Blast2go	filiform apparatus	GO:0043680	Cellular Component	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	69%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	69%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	69%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	69%
Blast2go	Protein kinase-like domain	IPR011009	-	69%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	69%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	69%
Blast2go	Malectin	IPR021720	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is longer than subject: 889 - 431

Fln protein: MGRARVRPSPAATLALFLGAMSFLWATPHPLSNGFIPADDIHLSCGASGNQKDSDGRTWVTDKGSKFAPPDLSNSFSETASSQSPSLPSTVPYMTARIFKAPATYSIAVSPGRHWLRLYFYPSNYGSYQATDALFNVEANSYTLLHNFSSGQTADVLNMASLLYEYSINVTSNKLNITFSPENPSSYAFVNGIEVESMPNLFDVDPLLVGVGASATFPIGSSYVLQTMYRLNVGGQSIGPSGDSNLSRTWYDDTPYLYGAASGVTLSNDTNVHYTASDPDYSAPQAVYQSFRSMTLNSELNLNSNLTWMLTANANFTYLVRLHFCEWIYTLPNQRVFDIYVNNQTAVEEFDVIGSGVTAGTAMYSDFVSSLSAQSDGNFWVALHPDAGSKPQYYNALLNGLELFKINDSSGNLAGPNPVAAAPVNYQGPGSNVTPPSSSSSSSSKGKGPVIGGVAGGIAALALLLAICCFVRQRRSGSAGDKHPGWLPLPLYGGNSHTIGSKVSTTSGKSGTGSYVSSAPSSFCRHFSFAEIQEATKNFDESRILGVGGFGKVYEGEIDGGGVKVAVKRGNPLAEQGIHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAKGPLRGHLYGNSNLTPLSWKQRLEICIGAARGLHYLHTGAAQTIIHRDVKTTNILIDENLVAKVSDFGLSKMGPTLDHTHVSTVVKGSFGYLDPEYYRRQQLTEKSDVYSFGVVLFEVLCARPAINPSLPREQVSIAEWALHYQRKGILEQIIDPYLKGKINPESLKKYGEAAEKCLAEQGVERPAMGDVLWNLEFALQLQETAIENKLVDDSTNNFVEISPDHNSNNIETYAVDGPSTVTSTGGHSLASEDLDDVTPSAVFSQLVNPQGR*

Protein Length: 890

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCAGAGGCATTCTTGAAGAAGACTCAGGACGTTTAACATAATCTGAGCTTTCTGGTTTTCGTGTCTTTGAAGAGTTGGGTGATCTGAGAACAGAGAGA_-_ATGGGCAGGGCTCGGGTTCGACCCTCGCCCGCGGCGACCCTGGCATTGTTTCTGGGTGCCATGAGCTTCTTGTGGGCGACCCCGCATCCACTGAGCAATGGCTTCATCCCCGCGGATGATATACATTTGAGCTGCGGTGCCTCAGGCAACCAGAAGGACTCAGACGGGCGGACTTGGGTGACCGACAAGGGCTCCAAATTTGCTCCGCCCGACTTGTCCAATTCTTTCTCAGAGACCGCCTCCTCACAGAGCCCTTCACTCCCCTCGACGGTCCCTTACATGACCGCTCGGATTTTCAAAGCCCCGGCCACATATTCCATCGCCGTTTCGCCGGGGCGACATTGGTTGAGGCTGTACTTCTACCCGTCCAACTACGGATCCTACCAGGCTACCGACGCGCTCTTCAATGTTGAGGCTAATTCCTACACGCTTCTTCACAACTTCAGCTCTGGGCAGACGGCCGACGTCCTGAACATGGCCTCGTTGCTCTATGAATACTCCATCAACGTGACCTCCAACAAGTTGAACATCACATTTTCACCAGAGAACCCGAGTTCATACGCCTTCGTCAATGGCATCGAGGTCGAATCGATGCCCAATCTCTTCGATGTAGACCCGTTACTGGTCGGGGTCGGCGCCAGTGCGACGTTTCCCATTGGTTCTTCCTATGTTTTGCAGACCATGTACAGGCTCAACGTGGGCGGGCAAAGTATTGGCCCAAGCGGGGACTCGAACCTGAGCCGGACCTGGTATGACGACACGCCTTATCTCTACGGCGCGGCCAGCGGCGTAACCTTGAGCAACGACACCAACGTGCACTACACGGCGAGTGATCCCGATTACTCCGCCCCGCAGGCGGTCTACCAATCCTTCAGATCCATGACTTTAAACTCAGAACTGAACTTGAATTCCAATTTAACGTGGATGTTGACGGCCAACGCGAATTTTACATACCTGGTCCGGCTTCATTTCTGCGAGTGGATTTACACTCTGCCGAATCAGAGGGTTTTTGATATTTATGTTAATAATCAGACTGCAGTTGAGGAATTTGATGTGATTGGAAGCGGTGTCACCGCAGGCACTGCTATGTACAGCGATTTTGTAAGTAGTCTCTCAGCGCAGTCGGACGGTAATTTCTGGGTAGCTTTACATCCTGATGCTGGCTCTAAACCTCAATATTATAATGCCCTTTTAAATGGGTTGGAACTGTTCAAGATTAACGATAGCTCGGGGAATCTGGCAGGGCCGAATCCAGTGGCCGCTGCTCCAGTGAATTACCAGGGTCCTGGTTCTAATGTGACTCCTCCTTCAAGTTCTAGCAGCAGCAGCAGCAAAGGTAAGGGTCCTGTGATTGGGGGAGTTGCTGGAGGGATTGCTGCACTAGCACTTCTTCTTGCTATCTGCTGCTTTGTTCGTCAACGCCGTAGTGGGTCAGCTGGTGACAAGCACCCTGGATGGTTGCCTCTACCACTCTATGGTGGTAACTCACACACCATTGGGAGCAAAGTTTCAACTACTTCTGGAAAGAGTGGTACTGGGAGCTATGTGTCATCTGCACCTTCCAGTTTTTGCAGACATTTTAGCTTTGCAGAGATACAAGAGGCTACCAAAAACTTTGATGAGTCGCGAATTCTTGGTGTTGGTGGTTTTGGGAAAGTTTATGAAGGAGAGATTGATGGTGGTGGTGTCAAGGTTGCAGTTAAGAGAGGAAACCCACTAGCAGAACAAGGTATCCATGAATTCCAAACAGAAATAGAGATGCTTTCTAAGCTCAGGCATCGCCATTTGGTGTCTCTTATTGGTTACTGCGAAGAAAATTGTGAGATGATTTTAGTTTATGATTACATGGCCAAGGGACCACTACGAGGACACTTGTATGGTAACAGCAATTTGACTCCTTTGTCATGGAAGCAAAGATTAGAAATCTGTATTGGGGCTGCTCGAGGTCTTCATTATCTTCACACAGGGGCTGCTCAGACCATCATACATCGGGATGTCAAGACCACAAATATACTTATTGATGAAAACTTAGTTGCAAAAGTTTCAGATTTTGGATTATCAAAAATGGGCCCAACTCTTGACCATACTCATGTTAGCACTGTGGTCAAAGGTAGCTTTGGATACCTGGACCCAGAATATTATCGTAGGCAGCAGCTCACTGAAAAGTCAGATGTTTATTCATTTGGTGTTGTGTTGTTTGAGGTGTTGTGTGCTCGACCTGCTATTAATCCATCTCTTCCTAGAGAACAGGTAAGCATTGCTGAATGGGCACTGCATTACCAGAGAAAGGGAATTCTGGAACAAATTATAGATCCTTATTTGAAAGGTAAAATAAATCCCGAGTCCCTTAAGAAGTATGGTGAGGCAGCTGAAAAATGTCTTGCCGAGCAAGGGGTTGAAAGGCCAGCTATGGGAGACGTGCTTTGGAACCTAGAATTTGCTTTGCAGCTCCAAGAAACTGCAATTGAGAATAAACTGGTTGATGACAGTACGAATAACTTTGTGGAAATCTCTCCTGACCACAACTCAAACAACATAGAAACTTATGCCGTTGATGGACCCAGCACTGTGACAAGCACCGGAGGCCATAGTTTGGCAAGTGAGGATTTGGATGATGTAACTCCAAGTGCCGTTTTTTCACAACTGGTGAATCCACAAGGGAGGTAA___TTGAATTGGCAGGTAGTACATTCATGTTTCTGCATTTGTTGTAGTACATGCAGCCAGCAAGTTGCACAAAAGATGGCACCAATAGTCAGGTAATTGAAAATTTTCTGTGCTTTATAAAATACCTAATTTAATATCATATTCATGGCCTCTAAAGTGGTTGTTGTTAATATTCAAATCCTTCAATGGGATAGACAGTTGTGAGGGTTCGTTTGCATTCTTTTTGAATGTTATATGCGAACTACTGTAATTAGCTTCCTTTATTGCACATTTGTATCGTGATACTGGACATAATGTTTCCAAGATCTCAAAATGGTTGCTTAGGTGGGAAATCATTTGTTTGTAGGAATTTAGGAAAGGAAGTAATCCTCCTGCAAAACATCAAATTGTATGTGATTGTAGAATTCAGTAATTTTGATGGAGTGTATTCTCCGTTATCTAGCATTTATGCTAATATGAGAAAGGGTGGATATCTAAGCCAATTCTCATTATATCGTATCTGCTTCTGCTGTTTACTGAAATAAGAAGGTGCTTTCACATTTCTAAATTAGAATTATACC

Fln Alignment:

sp_v1.1_unigene19925___SSFCRHFSFAEIQEATKNFDESRILGVGGFGKVYEGEID---------GGGVKVAVKRGNPLAEQGIHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAKGPLRGHLYGNSNLTPLSWKQRLEICIGAARGLHYLHTGAAQTIIHRDVKTTNILIDENLVAKVSDFGLSKMGPTLDHTHVSTVVKGSFGYLDPEYYRRQQLTEKSDVYSFGVVLFEVLCARPAINPSLPREQVSIAEWALHY-QRKGILEQIIDPYLKGKINPESLKKYGEAAEKCLAEQGVERPAMGDVLWNLEFALQLQETAIENKLVDDSTNNFVEISPDHNSNN
B8LKY1_______________SSQLLKFTFNELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLFRKGAL-PLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKDTA-------SSSFNYQALQSQHQSQH

SNPs (tot: 75)

Position	A %	C %	G %	T %	Probability
13	25		75		0.996473
17	25		75		0.996473
19	25	75			0.996473
23	25			75	0.996473
507	90			10	0.90298
512			90	10	0.90298
513		90	10		0.90298
516		90	10		0.90298
517		90		10	0.90298
521	10		90		0.90298
522		90	10		0.90298
530	87		12		0.992554
531	88	11			0.923564
532	11			88	0.923564
539			88	11	0.923564
540		88	11		0.923564
541	11			88	0.923564
542	88	11			0.923564
544			11	88	0.923564
545			11	88	0.923564
767	30		70		1.0
1216		85		14	0.993533
1386		80		20	0.999996
1387		20		80	0.999996
1389		80		20	0.999996
1390			20	80	0.999996
1391	20	80			0.999996
1393	80	20			0.999996
1394			80	20	0.999996
1397	80		20		0.999996
1398	80	20			0.999996
1401	10	20			0.999998
1453			77	22	0.999999
1511	71		28		1.0
1545		87		12	0.992554
1670		12		87	0.992554
1675		87	12		0.992554
1677		12		87	0.992554
1681		87		12	0.992554
1682	87		12		0.992554
1683		87	12		0.992554
1686			12	87	0.992554
1687		87		12	0.992554
1690		12	87		0.992554
1692	14			85	0.993533
1812		14	85		0.993533
1813			14	85	0.993533
1816	85			14	0.993533
1820			14	85	0.993533
1821	14		85		0.993533
1825			14	85	0.993533
1826		14		85	0.993533
1827	85	14			0.993533
2199	83			16	0.994512
2201			12	87	0.992554
2203			12	87	0.992554
2207		87		12	0.992554
2208		87	12		0.992554
2210		12		87	0.992554
2212		87	12		0.992554
2213			12	87	0.992554
2215	90	10			0.90298
2218			11	88	0.923564
2219			11	88	0.923564
2294	90		10		0.90298
2346	12		87		0.992554
2405		88		11	0.923564
2465	25	75			1.0
2769	10	90			0.90298
2773			11	88	0.923564
2842	75		25		0.996473
3076	66		33		0.997452
3255		21	78		1.0
3256			21	78	1.0
3285	27		72		1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1440	1455	AGC AGC AGC AGC AGC A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain