SustainPineDB

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Assembly info
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SNPs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19923

Length: 362 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene19923
CGTCGTGACCTTGGCTGTCACTCATGTTAAAGGAAACATGAAGAAAACTAAAACCATCACAAGGTTATATGGAGAGTTGATGTACTGTTTGGATGAACTTGGACTCTGGGGTGCAAAACAAGCTGTGGAAATGCAATTAGATGATATGGTTGGTAGTACAAATGCAAATGATGATAATGCTGAGAACCATGTTACTAATGCTTTTTTAAAGGATTCTTTTTTAATTTGGATCCTTATGTGGAAGGTTCTCGTAATGACACCAGACATACTCCTGCACAACTTGCATCACTGCTTTATGAAGATGGAGTTGATTGAGCTGCTGATATTTGATGAATGCCATCATGCTCAGAAACGCCATCCAT

Ace file of the UniGene sp_v1.1_unigene19923

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dicer-like 4 n=1 Tax=Physcomitrella patens RepID=B3SRQ1_9BRYO	-	-	5.0e-12	75%
FL-Next	sp=Dicer-like protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	76%
Blast2go	dsrna-specific nuclease dicer and related ribonuclease	-	-	9.35761e-12	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribonuclease III.	EC:3.1.26.3	-	9.35761e-12	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	9.35761e-12	85%
Blast2go	double-stranded RNA binding	GO:0003725	Molecular Function	9.35761e-12	85%
Blast2go	helicase activity	GO:0004386	Molecular Function	9.35761e-12	85%
Blast2go	DNA binding	GO:0003677	Molecular Function	9.35761e-12	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	9.35761e-12	85%
Blast2go	ribonuclease III activity	GO:0004525	Molecular Function	9.35761e-12	85%
Blast2go	intracellular	GO:0005622	Cellular Component	9.35761e-12	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P84634

Fln msg: Distance to subject end: 1439 aas, your sequence is shorter than subject: 120 - 1702

Fln protein: VVTLAVTHVKGNMKKTKTITRLYGELMYCLDELGLWGAKQAVEMQLDDMVGSTNANDDNAENHVTNAFLKDSFLIWILMWKVLVMTPDILLHNLHHCFMKMELIELLIFDECHHAQKRHP

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTAAAGGAAACATGAAGAAAACTAAAACCATCACAAGGTTATATGGAGAGTTGATGTACTGTTTGGATGAACTTGGACTCTGGGGTGCAAAACAAGCTGTGGAAATGCAATTAGATGATATGGTTGGTAGTACAAATGCAAATGATGATAATGCTGAGAACCATGTTACTAATGCTTTTTTAAAGGATTCTTTTTTAATTTGGATCCTTATGTGGAAGGTTCTCGTAATGACACCAGACATACTCCTGCACAACTTGCATCACTGCTTTATGAAGATGGAGTTGATTGAGCTGCTGATATTTGATGAATGCCATCATGCTCAGAAACGCCATCCAT

Fln Alignment:

sp_v1.1_unigene19923___KVLVMTPDILLHNLHHCFMKMELIELLIFDECHHAQKR--HP
P84634_______________EVLVMTPQILLHNLQHCFIKMECISLLIFDECHHAQQQSNHP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
170	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain