SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19854

Length: 455 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene19854
GTCTCCAACTGTACAACTTTTGGCCAGTGGCAGGAAACTTCTCGTCCATTTCCTGTGCCACTCAATTCATGTGATTTTGCACGGATCTCGCTGCATTATTTGTCGGCAGGCCCGCCATGGACGCTATAAGAATCGTCCCCATTTCACAACAATTCAAGCTTTAGCCCTCAGTCTGTGTTGAAGACGCAATTGTGGTTTCAATCAGGGCTTCAGAGTTTGACAATAATGGGGGGATTCGAGGATTTCCTGCCAATAATGGCTGAGAAGCTGGGAGAGCAGGATTTCATGGGGGAGTTGTGTAATGGGTTCCGTCTTCTAGCAGATCCCCAATCGCGTCTCATTACCCTGGAGAGCTTGAAAAAGAATTCGGCTCTGTTAGGGTTGGATTCGTTGACGGATTCAGAGCTGCGAGCGATGATGGACGAGGGGGATTCAGACGGCGACGGTGCTCTGAA

Ace file of the UniGene sp_v1.1_unigene19854

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding protein with EF-hand motif (Fragment) n=4 Tax=Pseudotsuga RepID=C6F9S2_PSEMZ	-	-	2.0e-31	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	calcium binding protein with ef-hand motif	-	-	4.05204e-31	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	calcium ion binding	GO:0005509	Molecular Function	4.05204e-31	82%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRD0

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 76 - 117

Fln protein: MGGFEDFLPIMAEKLGEQDFMGELCNGFRLLADPQSRLITLESLKKNSALLGLDSLTDSELRAMMDEGDSDGDGAL

Protein Length: 77

Fln nts: GTCTCCAACTGTACAACTTTTGGCCAGTGGCAGGAAACTTCTCGTCCATTTCCTGTGCCACTCAATTCATGTGATTTTGCACGGATCTCGCTGCATTATTTGTCGGCAGGCCCGCCATGGACGCTATAAGAATCGTCCCCATTTCACAACAATTCAAGCTTTAGCCCTCAGTCTGTGTTGAAGACGCAATTGTGGTTTCAATCAGGGCTTCAGAGTTTGACAATA_-_ATGGGGGGATTCGAGGATTTCCTGCCAATAATGGCTGAGAAGCTGGGAGAGCAGGATTTCATGGGGGAGTTGTGTAATGGGTTCCGTCTTCTAGCAGATCCCCAATCGCGTCTCATTACCCTGGAGAGCTTGAAAAAGAATTCGGCTCTGTTAGGGTTGGATTCGTTGACGGATTCAGAGCTGCGAGCGATGATGGACGAGGGGGATTCAGACGGCGACGGTGCTCTGAA

Fln Alignment:

sp_v1.1_unigene19854___MGGFEDFLPIMAEKLGEQDFMGELCNGFRLLADPQSRLITLESLKKNSALLGLDSLTDSELRAMMDEGDSDGDGAL
A9NRD0_______________MAGFEDFLPIMAVKLGEHDFMAELCNGFRLLADPGLGLITLESLRRNSALLGLDSLTDAELRAMMEEGDSDGDGAL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
144			20	80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain