SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19835

Length: 1074 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19835

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	NAK-like ser/thr protein kinase n=1 Tax=Glycine max RepID=C6ZRX4_SOYBN	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	49%
Blast2go	protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	83%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	83%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	83%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	83%
Blast2go	Protein kinase-like domain	IPR011009	-	83%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	83%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	83%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAA3

Fln msg: your sequence is shorter than subject: 277 - 458

Fln protein: SLEAWLHGPLDANHTLDWETRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRGNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPSGQENLVTWSRPILRDKDRLGELVDPRLGGKYPKEDFVQVCAIAAACVAPEANQRPTMGEVVQSLKMVQRTSENHQSRERDGLTETQINSNRHPTPNKRNIGPSSTTFESDGSSSIFSSGPFSGLSGIDNDNLSRTAVFSEDLQEGR*

Protein Length: 278

Fln nts: GAAGCTTAGAAGCTTGGCTTCATGGACCTCTAGATGCAAATCATACACTGGATTGGGAGACAAGAATGAAGATTGCTCTGGATGCTGCCCGTGGTCTTGCTTACCTCCATGAGGATTCCCAGCCTTGTGTCATTCACCGAGATTTTAAGGCATCCAATATTTTACTGGAGAATAATTTTCATGCTAAAGTAGCTGATTTTGGTCTTGCTAAGCAGGCTCCGGAGGGTCGGGGAAACTATTTATCTACTCGTGTAATGGGCACATTTGGGTATGTAGCTCCCGAATATGCTATGACTGGTCATCTTCTGGTAAAAAGTGATGTATATAGCTATGGAGTCGTTTTGCTGGAACTGTTGTCAGGAAGGAAACCTGTTGATATGTCTCAACCTTCTGGGCAGGAAAACCTTGTAACATGGTCTCGTCCAATCCTCAGAGATAAAGATCGGTTGGGAGAGCTTGTAGATCCTAGGCTTGGTGGCAAATATCCGAAGGAGGACTTTGTACAGGTATGTGCGATAGCAGCTGCTTGCGTAGCACCTGAAGCAAACCAGAGGCCAACCATGGGGGAGGTGGTTCAGTCTTTAAAAATGGTTCAGCGAACTAGTGAAAACCATCAGAGCAGAGAAAGAGATGGATTGACCGAAACTCAGATCAACTCCAATCGTCATCCTACACCAAATAAACGAAATATTGGACCATCATCAACCACATTCGAGTCAGATGGATCATCATCAATTTTTTCATCTGGTCCATTTTCTGGCTTAAGCGGAATTGACAATGACAATCTTTCACGCACGGCTGTTTTTTCTGAGGATCTGCAAGAAGGACGATAA___TTAGAGTGCCATTTCCAGAGGCTTTACACACTTTCCAGCAAGCTGTGCTCAGACAGAACTTTCATTTAACAATAGGTTCGCTGGAATCTTATGAAGTTTAAAGCTGCAGTGCTTGTTTGCATTGGTGGGTACTTCAGTATTACTGGGAGATTCGACACTAGTGAAGTTGGTTTTGACTGTTGAATCAAATAAAGCCTTTATGGGTTCCCGACCTACAACTTGAACAACCCCTTGTTACCTG

Fln Alignment:

sp_v1.1_unigene19835___SLEAWLHGPLDANHTLDWETRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFHAKVADFGLAKQAPEGRGNYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDMSQPSGQENLVTWSRPILRDKDRLGELVDPRLGGKYPKEDFVQXXXXXXXXXXPEANQRPTMGEVVQSLKMVQRTSENHQSRERDGLTETQINSN-RHPTPNK
D5AAA3_______________SLEDHLHDLPPDKEPLDWKTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLDEGYHSKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTIKSDVYSFGVVLLELITGRKAIDNSRSAGENNLVAWARPLFKDRRKFSQMADPLLQCRYPMRGLYQALAVAAMCVQEQATMRPLIADVVTALTYL-------ASQTYDPETHPVINSRFGPPTPSR

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
156	66			33	0.997452
157	66		33		0.997452
158	33			66	0.997452
159	66	33			0.997452
160		33		66	0.997452
163			33	66	0.997452
164	66		33		0.997452
168			66	33	0.997452
169	66	33			0.997452
172	66	33			0.997452
174	66	33			0.997452
263	66			33	0.997452
338		50		50	1.0
632	50			50	1.0
638			50	50	1.0
870	75		25		1.0
882			50	50	1.0
978	20		80		0.995493
979	20		80		0.995493
1035			62	37	1.0
1040		75	25		1.0
1062		75	25		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain