SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19825

Length: 2331 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19825
ATGGGCGCCCTCTTATCCACAATTCTCCTCTATAGATTTGCACGTTTGCCTTTTGCTGTGGCCAGTCAAGCGTAGCCAGCTTCCTACTTCCTGAGGTTTTACGAAATTCACACTAGGGTTTAAGATCCACTGAAGTAGATCAAAGCTCTGCCATGGCAACCAACGCGGCCTTCACCTTCGCGGGGGCACTGAACCTGTTTCAGCCCACAGCTCAACCAGATGGTCTGAGGAGCAGAAAGACGGCATTTTGTCAAAGGCCGATAGGTCCTCTTCAATTTAGAGCGAAACATCGAACGAGGAGCAACAGCAGGGTCTTGGTGAGGGCGTCGGCCAAGGATATATTGTTCGATCAGGCTTCGCGTGCAGCGGTGCAGAGGGGCATTGATAAATTGGCAGATGCCGTGGGCGTTACATTGGGGCCCAGAGGGCGGAATGTTGTATTGGACGAGCTTGGAATACCGAAGGTGGTGAATGATGGAGTTACCATCGCTCGTGCCATTGAGCTTGCTGACCCCATGGAAAATGCTGGGGCGGCCTTAATCCGAGAGGTTGCAAGTAAGACGAATGACTCAGCTGGTGATGGGACAACTACGGCATCAGTTTTGGCTCGGGAGATGATCAAACTAGGTCTTATGAATGTAACAGCGGGAGCAAATCCGGTTTCCTTGAAGAAAGGAATAGACAAGACTGTGCAGAGCCTAGTCGAAGAGCTACAGAAGAACGCCAGGGCTGTAAAAGGGCGGGATGATATCAAGGCGGTGGCCACGATTTCATCTGGGAATGATGATTTTGTGGGAACTATGATTGCTGATGCAATAGATAAGGTTGGGCCAGATGGAGTTCTGTCCATTGAGTCTTCATCTTCTTTTGAAACTACAGTTGATGTTGAGGAAGGAATGGAGTTCGACAGGGGGTACATATCTCCGCAATTCGTCACAAATGCAGAGAAGTTGATTGTAGAGTTTGAAAATGCTCGAATCTTGATCACTGATCAAAAAATTTCAACCATCAAAGAGATTGTCCCTTTATTAGAAAAGACCACACAGTTGAGAGCACCTTTGGTCATAATAGCAGAAGATCTCTCGGGGGAGGCATTGGCTACTTTAGTTGTGAATAAATTGCGTGGAGTAATCAATGTTGCTGCTGTCAAGGCACCAAGCTTTGGGGAGAGAAGAAAGGCTCTTCTCCAGGATATTGCTATTCTTACAGGTGCGGAATTCATAGCTGGTGATTTGGGTATGAAGGTTGAGAATACATCAGAAGAGCAGCTTGGTATTGCCAGAAAAGTCACCATAGCGAAAGGCTCGACGACAATAATCTCTGATGCTGCCAGTAAAGATGAAATTCAAGAAAGAATTGCACAAATTAAGAAAGAGCTAGCCGAGACAGATTCTGTCTATGACACGGAAAAATTGTCAGAAAGAATTGCAAAGCTCTCAGGAGGAGTGGCAGTTATTAAGGTTGGAGCGGCTACAGAGGCCGAACTTGAGGATAAACAACTTAGGATTGAAGATGCCAAAAATGCTACCTTTGCTGCAATTCAAGAAGGAATTGTGCCAGGAGGAGGAGCAGCTTTTGTTCATTTATCCTCTTATGTGCCTGCTATAAAAGAAACCATAGAAGATCCAGATGAACGCATTGGTGCTGATATTGTACAGAAGGCCCTTATGTCTCCAGCTGCATTAATTGCAAATAATGCGGGTGTGGAAGGAGATGTCGTGGTCGAGAAAATTCTGGCGCGTGATTGGGAGATGGGATATAATGCAATGACAGACGTATACGAAAATCTACTTAATTCTGGCGTGATAGACCCTGCAAAGGTTGCAAGGTGTGCACTGCAGAATGCAGCCTCTGTTGCAGGCATGGTCCTTACAACCCAGGCCATCGTAGTTGAGAAGCCTAAAAAGCCGGTGTATGCTGCTCCTGCTCCTACTCAGGGGATGACCATTTAGATTAGCTCTCTACAATGTTGAGGTTGAAATTGAGGACTGGGCATATGTTTCTGCGGCTGTGAGACATCAAAGTTTGGTGCTCACTTCCATTGTGCAGAGGCTGCCCGATTTTGGAAGAGAGGATTATCTGAATTATTTATGAGGTGTAAAAAAAATTATAGTGATGCTAATCAAACATCCTTATTCAATCTCTTTTACAATTGATTATTCTATCGTTCCAGTTCGCACAGGAGATCAAGCATACTTTCCCTTGCAAGGTAGGGTAAAATATAGGAAACCAGGGGTTACAGGATACGTGTATTTTGATCTGAGTTTTATGTTGAACTTGAGGTGAAAAGAATTTGGTGAATGTATTTTGCAATGTTACAGTTGAAAAAAA

Ace file of the UniGene sp_v1.1_unigene19825

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CPN60A; CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	rubisco subunit binding-protein alpha subunit	-	-	91%

Source	GOs	Term	Type	Identity
Blast2go	protein refolding	GO:0042026	Biological Process	91%
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	91%
Blast2go	chloroplast organization	GO:0009658	Biological Process	91%
Blast2go	embryo development	GO:0009790	Biological Process	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	91%
Blast2go	mitochondrion	GO:0005739	Cellular Component	91%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	91%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	91%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	91%
Blast2go	membrane	GO:0016020	Cellular Component	91%
Blast2go	apoplast	GO:0048046	Cellular Component	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQV7

Fln msg:

Fln protein: MATNAAFTFAGALNLFQPTAQPDGLRSRKTAFCQRPIGPLQFRAKHRTRSNSRVLVRASAKDILFDQASRAAVQRGIDKLADAVGVTLGPRGRNVVLDELGIPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREMIKLGLMNVTAGANPVSLKKGIDKTVQSLVEELQKNARAVKGRDDIKAVATISSGNDDFVGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEFDRGYISPQFVTNAEKLIVEFENARILITDQKISTIKEIVPLLEKTTQLRAPLVIIAEDLSGEALATLVVNKLRGVINVAAVKAPSFGERRKALLQDIAILTGAEFIAGDLGMKVENTSEEQLGIARKVTIAKGSTTIISDAASKDEIQERIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDKQLRIEDAKNATFAAIQEGIVPGGGAAFVHLSSYVPAIKETIEDPDERIGADIVQKALMSPAALIANNAGVEGDVVVEKILARDWEMGYNAMTDVYENLLNSGVIDPAKVARCALQNAASVAGMVLTTQAIVVEKPKKPVYAAPAPTQGMTI*

Protein Length: 601

Fln nts: ATGGGCGCCCTCTTATCCACAATTCTCCTCTATAGATTTGCACGTTTGCCTTTTGCTGTGGCCAGTCAAGCGTAGCCAGCTTCCTACTTCCTGAGGTTTTACGAAATTCACACTAGGGTTTAAGATCCACTGAAGTAGATCAAAGCTCTGCC_-_ATGGCAACCAACGCGGCCTTCACCTTCGCGGGGGCACTGAACCTGTTTCAGCCCACAGCTCAACCAGATGGTCTGAGGAGCAGAAAGACGGCATTTTGTCAAAGGCCGATAGGTCCTCTTCAATTTAGAGCGAAACATCGAACGAGGAGCAACAGCAGGGTCTTGGTGAGGGCGTCGGCCAAGGATATATTGTTCGATCAGGCTTCGCGTGCAGCGGTGCAGAGGGGCATTGATAAATTGGCAGATGCCGTGGGCGTTACATTGGGGCCCAGAGGGCGGAATGTTGTATTGGACGAGCTTGGAATACCGAAGGTGGTGAATGATGGAGTTACCATCGCTCGTGCCATTGAGCTTGCTGACCCCATGGAAAATGCTGGGGCGGCCTTAATCCGAGAGGTTGCAAGTAAGACGAATGACTCAGCTGGTGATGGGACAACTACGGCATCAGTTTTGGCTCGGGAGATGATCAAACTAGGTCTTATGAATGTAACAGCGGGAGCAAATCCGGTTTCCTTGAAGAAAGGAATAGACAAGACTGTGCAGAGCCTAGTCGAAGAGCTACAGAAGAACGCCAGGGCTGTAAAAGGGCGGGATGATATCAAGGCGGTGGCCACGATTTCATCTGGGAATGATGATTTTGTGGGAACTATGATTGCTGATGCAATAGATAAGGTTGGGCCAGATGGAGTTCTGTCCATTGAGTCTTCATCTTCTTTTGAAACTACAGTTGATGTTGAGGAAGGAATGGAGTTCGACAGGGGGTACATATCTCCGCAATTCGTCACAAATGCAGAGAAGTTGATTGTAGAGTTTGAAAATGCTCGAATCTTGATCACTGATCAAAAAATTTCAACCATCAAAGAGATTGTCCCTTTATTAGAAAAGACCACACAGTTGAGAGCACCTTTGGTCATAATAGCAGAAGATCTCTCGGGGGAGGCATTGGCTACTTTAGTTGTGAATAAATTGCGTGGAGTAATCAATGTTGCTGCTGTCAAGGCACCAAGCTTTGGGGAGAGAAGAAAGGCTCTTCTCCAGGATATTGCTATTCTTACAGGTGCGGAATTCATAGCTGGTGATTTGGGTATGAAGGTTGAGAATACATCAGAAGAGCAGCTTGGTATTGCCAGAAAAGTCACCATAGCGAAAGGCTCGACGACAATAATCTCTGATGCTGCCAGTAAAGATGAAATTCAAGAAAGAATTGCACAAATTAAGAAAGAGCTAGCCGAGACAGATTCTGTCTATGACACGGAAAAATTGTCAGAAAGAATTGCAAAGCTCTCAGGAGGAGTGGCAGTTATTAAGGTTGGAGCGGCTACAGAGGCCGAACTTGAGGATAAACAACTTAGGATTGAAGATGCCAAAAATGCTACCTTTGCTGCAATTCAAGAAGGAATTGTGCCAGGAGGAGGAGCAGCTTTTGTTCATTTATCCTCTTATGTGCCTGCTATAAAAGAAACCATAGAAGATCCAGATGAACGCATTGGTGCTGATATTGTACAGAAGGCCCTTATGTCTCCAGCTGCATTAATTGCAAATAATGCGGGTGTGGAAGGAGATGTCGTGGTCGAGAAAATTCTGGCGCGTGATTGGGAGATGGGATATAATGCAATGACAGACGTATACGAAAATCTACTTAATTCTGGCGTGATAGACCCTGCAAAGGTTGCAAGGTGTGCACTGCAGAATGCAGCCTCTGTTGCAGGCATGGTCCTTACAACCCAGGCCATCGTAGTTGAGAAGCCTAAAAAGCCGGTGTATGCTGCTCCTGCTCCTACTCAGGGGATGACCATTTAG___ATTAGCTCTCTACAATGTTGAGGTTGAAATTGAGGACTGGGCATATGTTTCTGCGGCTGTGAGACATCAAAGTTTGGTGCTCACTTCCATTGTGCAGAGGCTGCCCGATTTTGGAAGAGAGGATTATCTGAATTATTTATGAGGTGTAAAAAAAATTATAGTGATGCTAATCAAACATCCTTATTCAATCTCTTTTACAATTGATTATTCTATCGTTCCAGTTCGCACAGGAGATCAAGCATACTTTCCCTTGCAAGGTAGGGTAAAATATAGGAAACCAGGGGTTACAGGATACGTGTATTTTGATCTGAGTTTTATGTTGAACTTGAGGTGAAAAGAATTTGGTGAATGTATTTTGCAATGTTACAGTTGAAAAAAA

Fln Alignment:

sp_v1.1_unigene19825___MATNAAFTFAGALNLFQPTAQPDGLRSRKTAFCQRPIGPLQFRAKHRTRSNSRVLVRASAKDILFDQASRAAVQRGIDKLADAVGVTLGPRGRNVVLDELGIPKVVNDGVTIARAIELADPMENAGAALIREVASKTNDSAGDGTTTASVLAREMIKLGLMNVTAGANPVSLKKGIDKTVQSLVEELQKNARAVKGRDDIKAVATISSGNDDFVGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEFDRGYISPQFVTNAEKLIVEFENARILITDQKISTIKEIVPLLEKTTQLRAPLVIIAEDLSGEALATLVVNKLRGVINVAAVKAPSFGERRKALLQDIAILTGAEFIAGDLGMKVENTSEEQLGIARKVTIAKGSTTIISDAASKDEIQERIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDKQLRIEDAKNATFAAIQEGIVPGGGAAFVHLSSYVPAIKETIEDPDERIGADIVQKALMSPAALIANNAGVEGDVVVEKILARDWEMGYNAMTDVYENLLNSGVIDPAKVARCALQNAASVAGMVLTTQAI
B8LQV7_______________MATNSAFTFAAALSLFQPTAQPDGLGSRKMAFCQRPIAPRQFRAKYRARSNSRVLVRASAKDILFDQDSRASVQRGIDKLADAVGVTLGPRGRNVVLDEFGMPKVVNDGVTIARAIELPDPMENAGAALIREVASKTNDSAGDGTTTAAVLAREIIKLGLMNVTAGANPVALKKGIDKTVQGLVEELQKKATPVKGRDDIKAVASISSGNDDFVGTMIADAIDKVGPDGVLSIESSSSFETTVDVEEGMEFDRGYISPQFVTNAEKLIVEFENARILVTDQKISTIKEIVPLLEKTTQLRAPLVIIAEDLTGEALATLVVNKLRGVINVAAVKAPSFGERRKALLQDIAILTGADFIAGDLGMKVENTEVEQLGTARKITIAKGSTTIISDAASKDEIQARIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGATTEAELEDKQLRIEDAKNATFAAIQEGIVPGGGAAFVHLSSYVPAIKQTIEDPDERIGADIVQKALVSPAALIANNAGVEGDVVVEKILTSDWEMGYNAMTDTYENLLNSGVIDPSKVARCALQNAASVAGMVLTTQAI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
2098		33		66	0.997452
2108	66			33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain