SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19823

Length: 2245 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene19823
CGTCGTGACCTTGGCTGTCACTCACTCAGTTTACTAGTAGCCCTCGCTGCCTCTGTAATGATCTGTACTCTTGCCTTTATCAAAATTCTGTGGGTACGTTGTCTCTCCTGCACGCGGATTCCGCGCATTCCACGTTTTGTCGAGTTCCTCACAAAGTGGGTCGTCGAGCGTGAAGCTCTATTCTTTTACACCCGATTTTATTGGTTGTTATCCTTGTATCCGATTAACCGATGCGGAATTTCCACACTCCATTTATTAGCATAATTAAAGTGTTGGCATGAAAATTAGGTCAGAACCATATAAAGTAGTGAAGGTGATACGACTATGCGGATTTATATAAAGCAGTGAAGGTCATACGACTATGCGGATTTATATAAAACAGTGAAGGTGATACGACTATGCGGATTTACCCTAGTGAAGGTGATACGACTATGCGGATTTACCCTTGATGACAATGCTAGTTTGAGAATCAGATTCAGTTTACCCTTTGGCCATGTTGCTACACTATGAGGGGCATATTTATGCCATCAGAATGACCATGTGTTATAGCTGGCTGCATCCGCACCTACATTGGGGGTATTGAACCCAAATCTCTGCGTGAACCGGCGGACGTTATGTCTTGGGAATTTTCAGCAGGGTATGAAGATATAAAGTAAGGAGGAAACGAGCGCTTTGAAGATACAGTCCATAGAAATTTACGGACAGTTTAGCAGATAAAATTTGGCAGTTCCGTCGTGACCTTGGCTGTCACTCAAATGGGGGATTTTCTTACTTCTTCCCATCGGGAGCGCTGGATATTCACTGCCGCGGATACTGTTGAAAAATATCAAGCTGCAAATGAACGAGCTGTGAAGACACTCCAACAGTATGGATCTACAAAGTTAGAAGTTGAACTTGATGGATCAGTGGTGTACCCTGTAGAAGGAATTGATGCACAAGAAAATGGTGCTAAAAGGCATATCTTAGAGCCCCTTACTGTTGATGAGGAGTTACTTATGCTGAGATTTTATGAACAGAAGATACAAGAAGTTTGTGGAGCTTTTAAATTTCCTCATAAAATTCAGGCAACTGCTATATTGTACTTCAAACGTTTCTATTTACAGTGGTCAGTAATGGAGCATGATCCTAAACATATAATGCTAACTTGCATATACACATCATGCAAGGTGGAGGAATTCCATGTTTCAGCAGAGGAGCTTGGCAAGGGTATTCAACAAGACCATCAAGTTATCTTGAGAAATGAGATGCTTGTTCTTCAGAGTCTTGGATTTGATCTTATTGTCTATTCCCCATATCGCTCAATTGATGGATTTGCAGATGATATTGAGAACTTTTTTCAAGCAAAAGATGATTCATTACGGAGGCTGAAGGATCTGCAAGAAGCTGCAAAATCAGAGATTGACAAAAACATGTTGACTGATGCACCACTTATTTTTCTTCCAGGGCAGCTAGCTTTGGCTGCCTTACGGAGACTGAATAAAGAACAAAAGGCGTTTGACTTTGACAGGTATCTGAAGAGTGTTTGCATCCGACAAAGAAACAGCCATGCGGAGGCTGAGCTTGTTAATTTTCTTAATGAGATTGATGTTATGGTAAAGGATGCCAAGATCCCTGTAGCCAAAGATATGAGACACATTGACAGAAAACTCAAGCACTGCCGGAATCCAGGTCTTCATGATGAAAATAAGAAACGTGAGAAGAAGTCAAAACACAAGTCAAAACGGAGTTTCAGCGAAATGCAGTCATCAGCTCCAGTGTGACAAAGGAGCTGTTGAGGATCCTTGATGAAAGTTAGAGTATGTACAATGCCTCTATGAAAGTTAGAATATGCACAGTGCTTGGGGAAATTTCCCTAAAATATCTTTAAGCAACATATATTAACGAGTGCATTATCTCAAGGAATTTGTCAAAGTAAAAAATATTAAAATCAACGAGGTTTCATCATTTTTTGTTTCAATATGAATAATTTGTCACACAAATCTGAGATGCTATCATTTCCCTTTTTTCGATGGTGGCCGAGACTGAAATTGAACATTGGTGTATGAATAGTCATGGTTGAAGGATCGAAGTACGGAAGTGGTTGGCATATTCCCTTGTTTTTGGCAACAACTAGAAAATGAAGAAAAGCCAATGTAACTACGGAAGATATTAGAAAGCTGTTGAGAATCAGGTTTTGGGGCCTGAAGTTAATAAATTTCAAATTGTAAAATCATTTCCTTTCAAATTAATAGATATGTTTTACTTT

Ace file of the UniGene sp_v1.1_unigene19823

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pco103361; LOC100283483; K06634 cyclin H	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	25%
Blast2go	cyclin h-1	-	-	74%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cyclin-dependent kinase.	EC:2.7.11.22	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cell cycle	GO:0051726	Biological Process	74%
Blast2go	cyclin-dependent protein kinase activity	GO:0004693	Molecular Function	74%
Blast2go	protein binding	GO:0005515	Molecular Function	74%
Blast2go	cytoplasm	GO:0005737	Cellular Component	74%
Blast2go	nucleus	GO:0005634	Cellular Component	74%

Source	InterPros	Term	Type	Identity
Blast2go	Cyclin, N-terminal	IPR006671	-	74%
Blast2go	Cyclin-like	IPR013763	-	74%
Blast2go	Cyclin C/H/T/L	IPR015429	-	74%
Blast2go	Cyclin H	IPR015432	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZ75

Fln msg: your sequence is longer than subject: 335 - 248

Fln protein: MGDFLTSSHRERWIFTAADTVEKYQAANERAVKTLQQYGSTKLEVELDGSVVYPVEGIDAQENGAKRHILEPLTVDEELLMLRFYEQKIQEVCGAFKFPHKIQATAILYFKRFYLQWSVMEHDPKHIMLTCIYTSCKVEEFHVSAEELGKGIQQDHQVILRNEMLVLQSLGFDLIVYSPYRSIDGFADDIENFFQAKDDSLRRLKDLQEAAKSEIDKNMLTDAPLIFLPGQLALAALRRLNKEQKAFDFDRYLKSVCIRQRNSHAEAELVNFLNEIDVMVKDAKIPVAKDMRHIDRKLKHCRNPGLHDENKKREKKSKHKSKRSFSEMQSSAPV*

Protein Length: 336

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTCAGTTTACTAGTAGCCCTCGCTGCCTCTGTAATGATCTGTACTCTTGCCTTTATCAAAATTCTGTGGGTACGTTGTCTCTCCTGCACGCGGATTCCGCGCATTCCACGTTTTGTCGAGTTCCTCACAAAGTGGGTCGTCGAGCGTGAAGCTCTATTCTTTTACACCCGATTTTATTGGTTGTTATCCTTGTATCCGATTAACCGATGCGGAATTTCCACACTCCATTTATTAGCATAATTAAAGTGTTGGCATGAAAATTAGGTCAGAACCATATAAAGTAGTGAAGGTGATACGACTATGCGGATTTATATAAAGCAGTGAAGGTCATACGACTATGCGGATTTATATAAAACAGTGAAGGTGATACGACTATGCGGATTTACCCTAGTGAAGGTGATACGACTATGCGGATTTACCCTTGATGACAATGCTAGTTTGAGAATCAGATTCAGTTTACCCTTTGGCCATGTTGCTACACTATGAGGGGCATATTTATGCCATCAGAATGACCATGTGTTATAGCTGGCTGCATCCGCACCTACATTGGGGGTATTGAACCCAAATCTCTGCGTGAACCGGCGGACGTTATGTCTTGGGAATTTTCAGCAGGGTATGAAGATATAAAGTAAGGAGGAAACGAGCGCTTTGAAGATACAGTCCATAGAAATTTACGGACAGTTTAGCAGATAAAATTTGGCAGTTCCGTCGTGACCTTGGCTGTCACTCAA_-_ATGGGGGATTTTCTTACTTCTTCCCATCGGGAGCGCTGGATATTCACTGCCGCGGATACTGTTGAAAAATATCAAGCTGCAAATGAACGAGCTGTGAAGACACTCCAACAGTATGGATCTACAAAGTTAGAAGTTGAACTTGATGGATCAGTGGTGTACCCTGTAGAAGGAATTGATGCACAAGAAAATGGTGCTAAAAGGCATATCTTAGAGCCCCTTACTGTTGATGAGGAGTTACTTATGCTGAGATTTTATGAACAGAAGATACAAGAAGTTTGTGGAGCTTTTAAATTTCCTCATAAAATTCAGGCAACTGCTATATTGTACTTCAAACGTTTCTATTTACAGTGGTCAGTAATGGAGCATGATCCTAAACATATAATGCTAACTTGCATATACACATCATGCAAGGTGGAGGAATTCCATGTTTCAGCAGAGGAGCTTGGCAAGGGTATTCAACAAGACCATCAAGTTATCTTGAGAAATGAGATGCTTGTTCTTCAGAGTCTTGGATTTGATCTTATTGTCTATTCCCCATATCGCTCAATTGATGGATTTGCAGATGATATTGAGAACTTTTTTCAAGCAAAAGATGATTCATTACGGAGGCTGAAGGATCTGCAAGAAGCTGCAAAATCAGAGATTGACAAAAACATGTTGACTGATGCACCACTTATTTTTCTTCCAGGGCAGCTAGCTTTGGCTGCCTTACGGAGACTGAATAAAGAACAAAAGGCGTTTGACTTTGACAGGTATCTGAAGAGTGTTTGCATCCGACAAAGAAACAGCCATGCGGAGGCTGAGCTTGTTAATTTTCTTAATGAGATTGATGTTATGGTAAAGGATGCCAAGATCCCTGTAGCCAAAGATATGAGACACATTGACAGAAAACTCAAGCACTGCCGGAATCCAGGTCTTCATGATGAAAATAAGAAACGTGAGAAGAAGTCAAAACACAAGTCAAAACGGAGTTTCAGCGAAATGCAGTCATCAGCTCCAGTGTGA___CAAAGGAGCTGTTGAGGATCCTTGATGAAAGTTAGAGTATGTACAATGCCTCTATGAAAGTTAGAATATGCACAGTGCTTGGGGAAATTTCCCTAAAATATCTTTAAGCAACATATATTAACGAGTGCATTATCTCAAGGAATTTGTCAAAGTAAAAAATATTAAAATCAACGAGGTTTCATCATTTTTTGTTTCAATATGAATAATTTGTCACACAAATCTGAGATGCTATCATTTCCCTTTTTTCGATGGTGGCCGAGACTGAAATTGAACATTGGTGTATGAATAGTCATGGTTGAAGGATCGAAGTACGGAAGTGGTTGGCATATTCCCTTGTTTTTGGCAACAACTAGAAAATGAAGAAAAGCCAATGTAACTACGGAAGATATTAGAAAGCTGTTGAGAATCAGGTTTTGGGGCCTGAAGTTAATAAATTTCAAATTGTAAAATCATTTCCTTTCAAATTAATAGATATGTTTTACTTT

Fln Alignment:

sp_v1.1_unigene19823___EGIDAQENGAKRHILEPLTVD-----EELLMLRFYEQK-IQEVCGAFKFPHKIQATAILYFKRFYLQWSVMEHDPKHIMLTCIYTSCKVEEFHVSAE----ELGKGIQQDHQV--ILRNEMLVLQSLGFDLIVYSPYRSIDGFADDIENFFQAKDDSLRRLKDLQEAAKSEIDKNMLTDAPLIFLPGQLALAAL
A9NZ75_______________ELLDAEKVG----IVHPLDKEHGLTQEDVKIIKIHMSNYIRTLSQSVKVRQRVVATAITYFRRVYTRKGFTEYDPQLVAPTCLYLASKAEESTVQAKLVIFYMKRYTKHRYEIKDMLEMEMKLLEALDYYLVIYHPYHPLIQLLQD------------ANLAELKVTAWSLVNDTYRTDLILTYAPYMIALACI

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
51		75	25		0.996473
57	25			75	0.996473
58	75	25			0.996473
59	75	25			0.996473
61			75	25	0.996473
62	75		25		0.996473
63			25	75	0.996473
73	25			75	0.996473
382	50		50		1.0
411		25		75	0.996473
412	75		25		0.996473
414	25	75			0.996473
415		75	25		0.996473
425		25		75	0.996473
426		25	75		0.996473
429	75		25		0.996473
430	25	75			0.996473
1199	90			10	0.90298
1201	10		90		0.90298
1202	90	10			0.90298
1203			90	10	0.90298
1205	10			90	0.90298
1281		16		83	0.994512
1289		16		83	0.994512
1293		16		83	0.994512
1519		33	66		0.997452
1571		25		75	0.996473
1704	20			80	0.995493
1804	85		14		0.993533
2038	85		14		0.993533
2055			85	14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain