SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19816

Length: 1883 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19816

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial carrier protein, putative n=1 Tax=Ricinus communis RepID=B9RIM4_RICCO	-	-	60%
FL-Next	tr=Mitochondrial carrier protein, putative; Ricinus communis (Castor bean).	-	-	68%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	72%
Blast2go	binding	GO:0005488	Molecular Function	72%
Blast2go	transporter activity	GO:0005215	Molecular Function	72%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	72%
Blast2go	integral to membrane	GO:0016021	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Mitochondrial substrate/solute carrier	IPR018108	-	0.0	72%
Blast2go	Mitochondrial carrier domain	IPR023395	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9RIM4

Fln msg: Overlapping hits, possible frame ERROR between 803 and 802,

Fln protein: MVGTGPPSSSSSSMFTAWIAAMSRIDFTNSAAAAAAAVNSTSSSDSMPEVRVSEGRDSSKDSDNQAVGYSSAQLNLGFRERAFSAAGAAFLSAIIVNPLDVVKTRMQAQAAGAPYYPHAHENLRTSMATLGENTVFAQVKCPPVCPRGGAFGMTPLCPPSCFQYKGTLDVFYKIIRQEGFSRLWRGTNAGLALAIPTVGIYLPCYDIFRDWLESFTSKNAxxKFTPYAPLVAGSIARSLACITCSPIELARTRMQAQKGIPMGVKPPGILKTLFGVLSVVKNEPMQNNFKGLFVLWTGVGAQLARDVPFSAICWSTLEPVRRHILTLVGDEANGASILGANFSAGFIAGSIAAVLPPVLWMLQKHGDR*RKIR*KQ*KPVQGKL**RFGGMVEYEGYLWV*GHVWGVQDPLLVLLFHFTKL*

Protein Length: 423

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTCTTCTTGATCGCGCCCACGCTGTCGTGGAGGTTTTTGCGATGGTTTCCACGAGCAATCGCCTGCTTACCACAACAAAACTTGAATTCTGATTGTTGGAAGAAACATAAAAGCA_-_ATGGTAGGGACGGGACCGCCTTCATCATCTTCTTCTTCGATGTTTACTGCATGGATTGCAGCCATGTCCAGGATTGATTTCACCAACAGCGCCGCCGCTGCGGCAGCGGCCGTGAATTCTACCTCTTCTTCTGATAGCATGCCGGAGGTTCGAGTCTCGGAGGGGCGCGACTCTTCTAAAGATAGCGATAATCAAGCAGTGGGCTATTCTTCGGCACAGTTAAACCTGGGATTCAGAGAAAGGGCATTTTCTGCTGCGGGTGCTGCTTTTCTGTCGGCGATTATTGTCAATCCATTGGATGTTGTCAAGACGAGAATGCAAGCCCAGGCAGCTGGTGCCCCCTATTATCCACACGCCCATGAGAACCTCAGAACGTCCATGGCGACTCTCGGAGAAAACACGGTGTTTGCTCAAGTGAAGTGTCCTCCAGTCTGTCCTCGGGGAGGTGCATTTGGGATGACTCCACTTTGTCCTCCTAGTTGTTTTCAGTATAAAGGAACTCTAGATGTTTTTTACAAAATCATTCGACAGGAAGGCTTCTCTCGCCTATGGAGAGGTACTAATGCAGGTTTAGCATTGGCCATACCTACTGTAGGAATATATTTACCTTGCTATGACATTTTTCGAGACTGGCTTGAGAGCTTTACGAGTAAGAATGCAxxxxxxAAATTCACTCCATATGCTCCATTAGTAGCAGGATCAATAGCACGGTCATTGGCCTGTATTACTTGCTCTCCTATTGAATTAGCAAGAACACGGATGCAGGCACAAAAAGGGATTCCAATGGGAGTAAAGCCTCCGGGAATTTTGAAGACACTTTTTGGTGTCCTGTCCGTTGTGAAGAATGAACCCATGCAAAATAATTTTAAAGGATTGTTTGTGCTATGGACTGGAGTTGGAGCCCAGCTAGCTCGCGATGTACCTTTCTCAGCAATTTGCTGGTCAACACTTGAGCCAGTTAGACGGCACATACTTACACTTGTTGGGGATGAAGCTAATGGAGCGAGTATTCTAGGAGCCAACTTTTCAGCCGGTTTTATAGCTGGGAGTATTGCTGCTGTCCTGCCACCTGTCCTTTGGATGTTGCAAAAACACGGAGACAGATAGAGAAAGATCCGATGAAAGCAATGAAAACCAGTACAAGGGAAACTTTGATGAAGGTTTGGAGGGATGGTGGAGTACGAGGGCTATTTATGGGTGTAGGGCCACGTGTGGGGCGTGCAGGACCCTCTGTTGGTATTGTTGTTTCATTTTACGAAGTTGTAA___AGCACTTGGTACACCAAAGACAGGTGGCTTCATGATCATCAAATCAACAAATACATTCATAGAGCTGTGTATATTTTGAATTGAGATGGTTTATGATGCTATGCTGGAAAAGTTGACAAGTCTCATCTCAAGATTCGCAAATGCGTCATTCCAGATCAGGGTAATGGGGGGATTCTTGTTGACACAAAGTTTAACAGGTTATTCCGATCTTTCTATTTGTATAGAATCGTCTCCAGTCGAATACCAGTTTTACTGTTTTGACAGAGCTCGGGAATTTTTTCTGCAAATTAAAAGTCACATAGTCGTGCTATTAACAGTTGAGGTTGATGAAATACGTAATTCCCTTTGCTCATCATAGGTTGCTTCCTTCCTACATTGTGCAGGCTAATTTAAGTGGCTTTGCCTTATGGGGAAGGGAAGGGAGGAGCTCTCCTTTGTAGTTATTTCACGAGCAATGAAATACAGTGATACTCTTCCCA

Fln Alignment:

sp_v1.1_unigene19816___SSAQLNLGFRERXXXXXXXXXXXXIIVNPLDVVKTRMQAQAAGAPYYPHAHENLRTSMATLGENTVFAQVKCPPVCPRGGAFGMTPLCPPSCFQYKGTLDVFYKIIRQEGFSRLWRGTNAGLALAIPTVGIYLPCYDIFRDWLESFTSKNAxKFTPYAPLVAGSIARSLACITCSPIELARTRMQAQKGIPMGVKPPGILKTLFGVLSVVKN-EPMQNNFKGLFVLWTGVGAQLARDVPFSAICWSTLEPVRRHILTLVGDEANGASILGANFSAGFIAGSIAA
B9RIM4_______________SKPDWKLGFGERAFSAAGAAFLSAILVNPLDVAKTRLQAQAAGVPY-SHPLSNIVSRMAYFGPNMMFADLRCSPSCARAGVHGTVSICPPDCFQYKGTLDVFYKIIRQEGFARLWRGTNAGLALAVPTVGIYLPCYDVFRNLMEEFTSQKVxGATPYVPLLAGALARSLACATCYPIELARTRMQAFKAVQSGMKPPGVLKTLLEVLSHVRGTDNIQHNLRGYRALWTGMGAQLARDVPFSAICWSTLEPIRRRLLGLLGEESSAASILGANFSAGFVAGSLAA

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
6	33		66		0.997452
9	66		33		0.997452
10		66	33		0.997452
11		66	33		0.997452
12			33	66	0.997452
16	33	66			0.997452
17	33			66	0.997452
19	33			66	0.997452
20		66	33		0.997452
21	66		33		0.997452
23	33			66	0.997452
70		33		66	0.997452
203	33			66	1.0
230		66		33	0.997452
856			66	33	0.997452
1025		25		75	0.996473
1240	90		10		0.90298
1650		76		23	1.0
1718	12			87	0.992554
1756		40		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain