SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19805

Length: 1364 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19805

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Microsomal signal peptidase 23 kD subunit, putative n=1 Tax=Ricinus communis RepID=B9RF33_RICCO	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	signal peptide processing	GO:0006465	Biological Process	89%
Blast2go	peptidase activity	GO:0008233	Molecular Function	89%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	89%
Blast2go	cell wall	GO:0005618	Cellular Component	89%
Blast2go	integral to membrane	GO:0016021	Cellular Component	89%
Blast2go	signal peptidase complex	GO:0005787	Cellular Component	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPS9

Fln msg:

Fln protein: MHSFAYRANALFTFGVTILAIMCVMASLSDNLNTPTPQAQIEVLNINWFQKQPNGNDEVSLTLNISADLQSLFTWNTKQVFVFVAAEYESQKNALNQVSLWDAIVPSKEHAMFWIHTANKYSFVDQGSNLRGQEFNLTMHWHVMPKTGYMYADKKVISGFRLPEEYK*

Protein Length: 169

Fln nts: TCTTCATATTTTAATATTCTTGAAACCCTCTTTTATCCATTGGGTAATCCGTTTAACCTTTCTCAGCTTACAGAGTTCGATACACTCACCAGGTCTTCATTGGGGCCGCATTGACTTTGATGTCTCGCAGGCCACTGTGTCTCAGTCTTGTGGTTTGTGTCACCGCCGTCTAGGGTTGTTCGGTTATTTGCAGGCCAGAATTGAAGCGAATCGGAGCTCTCGGAGGCCAAAATTGAAAG_-_ATGCATTCGTTTGCGTACAGGGCAAATGCCCTGTTTACATTCGGAGTGACTATTTTGGCCATTATGTGTGTGATGGCCTCACTTTCTGACAATCTTAACACACCCACGCCTCAGGCACAGATCGAGGTTTTAAACATTAATTGGTTTCAGAAGCAACCAAATGGAAATGATGAGGTTAGTTTGACATTGAATATCTCAGCAGATTTGCAATCATTATTTACATGGAACACAAAACAGGTCTTTGTCTTTGTAGCAGCAGAATATGAGAGTCAAAAGAATGCATTGAATCAGGTGTCACTGTGGGATGCTATCGTACCTTCAAAAGAGCATGCTATGTTTTGGATCCACACGGCAAACAAATATAGCTTTGTTGATCAGGGAAGCAATCTACGTGGTCAGGAATTCAATTTGACAATGCACTGGCATGTCATGCCAAAGACGGGTTATATGTATGCTGACAAAAAAGTGATATCAGGTTTCCGTCTGCCAGAGGAATATAAGTAG___TGTTGATTTAATAAATTAATTCCAGCAGTTAAAGCTGCTGCTTGTTATGAAATGAAAATTTTTTGTGGAGGAAGAGTCTCCTGCGTGAATTCTTTGCTTAGATTCTATTTTCTTATTGCTTATTTTGTGAAGTCTAGGAATACAGGGCATTTTATTATTTATGTTAGGATACAATGTCTCTCCATTTAATGGAGGGTTGCCGGGGTCTGGCCACATATCTTTTGTCTTCCAAAATAACTGGATGCCAATCTAATTAGGCCCTTCAATTTTGCAAAATGGGTTGCTTTGTTATGGTGAAGAACTAAAGCTTCATATGTTTACTCTAAAATTATGTTCAAATGGAAGGGTATTGTATGCTCTTTAGAAAAGTGCTGATTTTAGAATTAGTGATATCAGTTAGAATTATGGAGTTGAAAATTGTGGCAAGCATGCCTTCCCTTATCCATGTGTGGCAGGTGTACTTTTCCCCAATCAGGGATAATTACAGTGTAATCTGGCTTATAATACTTGAGAAATATCATTTTGGGTAAAATATAGGGGATGCCAAAGTCACACAGGACTTGCACCTGGCCCTGGATGCTTGAGGCGGTCTGCTTGTGGGTGAGACAGATCAAGAGGGTT

Fln Alignment:

sp_v1.1_unigene19805___MHSFAYRANALFTFGVTILAIMCVMASLSDNLNTPTPQAQIEVLNINWFQKQPNGNDEVSLTLNISADLQSLFTWNTKQVFVFVAAEYESQKNALNQVSLWDAIVPSKEHAMFWIHTANKYSFVDQGSNLRGQEFNLTMHWHVMPKTGYMYADKKVISGFRLPEEYK
A9NPS9_______________MHSFAYRANALFTFGVTILAIMCVMASLSDNLNTPSPQAEIEVLNINWFQRQPNGNDEVSLTLNISADLQSLFTWNTKQVFIFVAAEYESEKNALNQVSLWDAIIPSKEHAMFWIHTANKYSFVDQGSNLRGQEFNLTMHWHVMPKTGYMYADKKVISGFRLPEEYK

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
43		20	80		0.995493
46	80	20			0.995493
47	80		20		0.995493
50	20	80			0.995493
52		20	80		0.995493
55			25	75	0.996473
56	75		25		0.996473
57	75	25			0.996473
58		75		25	0.996473
59		75	25		0.996473
61		25		75	0.996473
62	25			75	0.996473
690		10		90	1.0
693	90	10			1.0
701	89			10	1.0
702	89			10	1.0
703	89		10		1.0
704	89		10		1.0
705	89	10			1.0
706	82			10	1.0
709		10	89		1.0
711		10		89	1.0
956		93		6	0.999453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain