SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19801

Length: 1283 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19801

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glycosyl hydrolase family 3 protein	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	50%
Blast2go	glycosyl hydrolase family 3 protein	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xylan 1,4-beta-xylosidase.	EC:3.2.1.37	-	0.0	73%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	73%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	73%
Blast2go	Metabolic pathways	01100	73%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	73%
Blast2go	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	73%
Blast2go	vacuole	GO:0005773	Cellular Component	73%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	73%
Blast2go	apoplast	GO:0048046	Cellular Component	73%
Blast2go	chloroplast	GO:0009507	Cellular Component	73%
Blast2go	plasma membrane	GO:0005886	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	0.0	73%
Blast2go	Glycoside hydrolase, superfamily	IPR017853	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNI8

Fln msg: your sequence is longer than subject: 384 - 151

Fln protein: MKSCSPFTIISLILATGILPFIAYAQQPVQLKYPCDPHATETKSYAFCNTSLPIKTRVEDLIKRLTLREKVGQLSTSAEEIARLGIPSYKWWSESLHGIATNGTGVRFNGTIKAATSFPQVILTTASFNQTLWTEIAKAIAIEGRAMYNSAQAGLTFWAPNVNIFRDPRWGRGQETPGEDPLTVSKYAVAYVRGFQGEQIDPHTHEPSRLMLSACCKHFTAYDLDNWNGYDRHNFNALVTQQDLEDTFQPPFKSCVKEGHTSCLMCSYNQVNGVPACAHYDLLSQSARSDWGFQGYITSDCRAVSDIYANQSYAKTPEDAVADVLKAGLDIDCGSYLLQNTISAVEKGRSRSHLLTEPFSTYSQYKCVLDFSMVIPSIKNMVI*

Protein Length: 385

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAACTCCTTTAAAAGCACCAACAAGCTACTCAGCATCGAACGCCCAATTTAACT_-_ATGAAGTCTTGCAGTCCATTTACCATAATATCGCTAATCCTCGCCACTGGCATCCTCCCATTCATTGCATATGCGCAGCAGCCAGTCCAGTTGAAATATCCATGCGACCCTCATGCTACTGAAACAAAATCCTATGCTTTCTGCAACACATCTCTCCCAATAAAAACCCGCGTTGAAGACTTAATAAAACGGCTGACATTGCGCGAGAAAGTGGGACAGCTCTCGACCTCGGCTGAAGAAATAGCAAGACTGGGAATACCCAGTTACAAATGGTGGTCTGAGTCCCTCCACGGCATTGCGACTAATGGAACAGGGGTTCGTTTCAATGGGACCATCAAGGCAGCTACCAGTTTTCCGCAGGTTATTCTTACAACAGCTTCCTTCAACCAAACCTTGTGGACTGAAATTGCAAAGGCCATTGCCATTGAAGGCCGTGCAATGTACAATTCTGCTCAGGCGGGTCTCACATTTTGGGCCCCTAATGTTAATATCTTCAGAGATCCTCGTTGGGGACGTGGCCAGGAGACTCCTGGGGAAGATCCTTTAACTGTCAGTAAATATGCTGTTGCATATGTACGTGGCTTTCAAGGAGAACAAATAGATCCTCACACTCATGAGCCTAGCAGGTTAATGCTGTCTGCGTGTTGCAAGCATTTTACTGCTTATGATCTCGACAATTGGAATGGTTATGATCGTCATAATTTCAATGCTCTGGTTACTCAACAAGATTTAGAAGACACATTCCAACCGCCCTTTAAGAGTTGTGTGAAAGAAGGGCATACAAGTTGTCTGATGTGCTCTTACAACCAGGTAAATGGAGTCCCAGCATGTGCACATTATGACCTCCTTTCTCAATCAGCAAGATCTGATTGGGGATTTCAAGGGTATATTACTTCTGACTGTCGCGCTGTTTCGGACATTTATGCTAATCAAAGCTATGCAAAAACTCCCGAAGATGCAGTTGCAGATGTTCTGAAAGCTGGCCTGGATATCGACTGTGGATCATATTTGCTTCAGAACACAATATCGGCAGTGGAGAAAGGAAGGTCCAGGAGTCATCTATTGACCGAGCCCTTTTCAACATATTCTCAGTACAAATGCGTCTTGGATTTTTCGATGGTGATCCCAAGCATCAAAAATATGGTGATCTAG___GGCCCCAGGATGTATGCTCTGAGGATCATCAACACCTTGCATTAGAGGCTGCT

Fln Alignment:

sp_v1.1_unigene19801___MKSCSPFTIISLILATGILPFIAYAQQPVQLKYPCDPHATETKSYAFCNTSLPIKTRVEDLIKRLTLREKVGQLSTSAEEIARLGIPSYKWWSESLHGIATNGTGVRFNGTIKAATSFPQVILTTASFNQTLWTEIAK
B8LNI8_______________MESLVLFIWIGVVLNGGTLVHSAGS-------FPCDP-STGLNSFPFCNVSLPIADRAKDLVGRLTLQEKVQQLVNGASNISRLGIPMYEWWSEALHGVSDVGPGTRFGAPVPGATSFPQVILTAASFNDTLWEAIGR

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
150		33		66	0.997452
156		66	33		0.997452
158		33	66		0.997452
161	66			33	0.997452
163		66	33		0.997452
165	66			33	0.997452
171		33	66		0.997452
175	66	33			0.997452
273			66	33	0.997452
280	66	33			0.997452
289	66			33	0.997452
290		33	66		0.997452
292	66	33			0.997452
293	66			33	0.997452
294		33	66		0.997452
295	33			66	0.997452
786			11	88	0.923564
787			11	88	0.923564
788		88	11		0.923564
853	80		20		0.995493
952	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain