SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene19778

Length: 1634 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene19778

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5'-3' exoribonuclease 3 n=2 Tax=Arabidopsis thaliana RepID=XRN3_ARATH	-	-	6.0e-28	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	5 -	-	-	0.0	48%

Source	GOs	Term	Type	Identity
Blast2go	response to hormone stimulus	GO:0009725	Biological Process	48%
Blast2go	RNA catabolic process	GO:0006401	Biological Process	48%
Blast2go	exonuclease activity	GO:0004527	Molecular Function	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8N3

Fln msg:

Fln protein: MENITGNQVLSVIYKCPPTHKHITRPPNGVIMPKKTVCEQDVNTPTLWHEDNGRRARDQGRPQHTGSVSAPHLGESAHRLIGNSLQLRNSSSQEVTREAYSHSSFQRRADNQGYEYGYPSDSLQEVLHSVRSPMQHEARTREGKLDMPSLYQTNKPYSHSSYPSRADNQGYQHRYPSDSCQNYNSGVYNGSQIHGQGYIASAYNSYGGTYNGSQNHGQGYTAAASNSYGGIYNMGDSHNRNDNHGRGYIASASNSYRGTYNKGERYNANENYGQGYTASASNSYGGTYMGSKNNEQGYPISASNSYGERCYGNQNRHSYDSSHQQIQSSVSIDGYHGYQGRMAIHQQNGRTNSYLDQDSMMQVGNRSQHAVRNSQSHVLPRYGGYQQ*YPAYKHQMLRPSEGAGQEIHQRQTYSNSEHSVQ*

Protein Length: 423

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCCTATGCCCTTGCCATGGAGACGCATGCCCAACAATCTTCATTTCACCCATTAAGGGG_-_ATGGAAAATATCACAGGCAACCAAGTGCTTTCTGTCATTTACAAGTGCCCACCAACACACAAACACATCACAAGGCCTCCAAATGGAGTAATCATGCCAAAGAAGACTGTATGTGAACAAGATGTAAATACGCCAACTCTATGGCATGAAGATAACGGGCGGAGAGCACGTGATCAAGGAAGGCCGCAACATACTGGATCCGTCTCAGCTCCTCATCTAGGAGAATCTGCTCATCGTCTTATTGGAAACAGTCTGCAATTAAGGAACAGCAGCTCACAGGAGGTCACACGTGAAGCTTATAGCCATAGTTCATTTCAAAGACGAGCTGATAATCAAGGATATGAATATGGATATCCTTCAGACAGCTTACAGGAAGTACTGCATAGTGTGCGGAGTCCAATGCAGCATGAAGCTCGCACTAGAGAAGGTAAACTTGATATGCCCTCTCTGTACCAGACCAACAAGCCTTATAGTCATAGTTCATATCCTAGTAGAGCTGATAATCAAGGATATCAACATAGGTATCCTTCAGATAGCTGTCAAAACTATAACAGTGGAGTGTATAATGGCAGTCAGATTCATGGTCAGGGTTATATAGCCTCTGCTTACAATTCTTATGGTGGAACATACAATGGCAGTCAGAATCATGGCCAGGGTTATACAGCCGCTGCTAGCAATTCTTATGGTGGAATATACAATATGGGTGACAGTCATAACAGGAATGATAATCATGGTCGAGGTTACATAGCCTCTGCTAGCAATTCTTATCGTGGAACCTACAATAAAGGTGAAAGATACAATGCCAATGAGAATTATGGTCAGGGTTATACAGCCTCTGCTAGCAATTCTTATGGTGGAACATATATGGGCAGTAAGAATAATGAGCAGGGTTATCCCATATCTGCTTCCAATAGTTATGGTGAAAGATGCTATGGCAATCAGAATCGTCATAGCTATGATAGTTCACACCAACAAATTCAGTCTTCTGTCTCTATTGATGGGTACCATGGCTACCAAGGACGAATGGCCATTCACCAGCAAAATGGTAGAACAAATTCCTACTTAGATCAGGATAGCATGATGCAAGTTGGCAATAGGAGTCAGCACGCAGTGAGAAATTCTCAATCCCATGTTCTTCCAAGATATGGAGGTTACCAGCAGTAATATCCAGCCTATAAACACCAAATGCTGCGTCCATCTGAGGGTGCAGGACAAGAAATTCATCAGAGACAAACTTACTCAAATTCCGAACACAGTGTTCAATAA___ATATTCAGTTTTAATGCAGAAAAGTAATGATGACCGATAATGACAGGCCAAGGCTTTTGGGCCCAGATCATCTGGATTCTGTACCAGGTCTTTAGAGGATTGTGTGTTTAGAATTTGGTAGCTTGTCTGTAAAACGTTGAAAATCCCGTGTTCTAAGTTTTTACAATTCTGTGTTCTGTTAGCAACAGTGTCTTTGTTGAATTTCGATCTTCTGTCATTAACATTCAGAGTCTAAGGATTGCAATTTCAATTTTATTCTAATATAAATTATTTTATTCTAACT

Fln Alignment:

sp_v1.1_unigene19778___NGRRARDQGRPQHTGS-------VSAPHLGESAHRLIGNSLQLRNSSSQEVTREAYSHSSFQRRADNQGYEYGYPSDSLQEVLHSVRSPMQHEARTREGKLDMPSLYQTNKPYSHSSYPSRADNQGYQHRYPSDSCQNYNSGVYNGSQIHGQGYIASAYNSYGGTYNGSQNHGQGYTAAASNSYGGIYNMGDSHNRNDNHGRGYIASASNSYRGTYNKGERYNANENYGQGYTASASNSYGGTYMGSKNNEQGYPISASNSYGERCYGNQNRHSYDXXXXXXXXXXXXDGYHGYQGRMAIHQQNGRTNSYLDQDSMMQVGNRSQHAVRNSQSHVLPRYGGYQQ*YPAYKHQ-----MLRPSEGAGQEIHQRQTYSNSEHSV
D5A8N3_______________NPRRADNQGYRHGYPSDSSQEVMLSGKHPMQHEARTGGGILDLY---SPYETNKPYSHSSYPRRAGNQGYEHGYPSDSSRDVMLSAQHPMQHESHTRGGILDMPSPYQTNKPYSHSSYPRRGDNQGYQHGYPSDSGQKYNSGVYNGSQNHGQGYTASARNSYGGTYDGSQNHGQGYTAPASNLYGGTYNKGERHNGNENHGPGYTASAGNSYGGT------YNGSQNSDQGYAVPAFNSYGERYNGNQNHGQSYGSSS----------HQQLQS----------SVPVDGYYGYEGQKGIQQQNGRINSHLYQDSMTQVGNQSQQPMRNSQSHVLPRYGGYQQQYPAHKPQPYLSPMLPPSEGAGQEIHHRQTYSNSDHTM

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
61	66			33	0.997452
103	33	66			0.997452
121		50		50	1.0
241		66		33	0.997452
1101		66	33		0.997452
1290	10		90		0.90298
1348	88		11		0.923564
1583		12		87	0.992554
1631		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain